\r
import javax.persistence.Entity;\r
import javax.persistence.FetchType;\r
+import javax.persistence.JoinColumn;\r
import javax.persistence.ManyToOne;\r
import javax.persistence.OneToMany;\r
import javax.persistence.OneToOne;\r
import org.hibernate.annotations.Cascade;\r
import org.hibernate.annotations.CascadeType;\r
import org.hibernate.envers.Audited;\r
+import org.hibernate.search.annotations.IndexedEmbedded;\r
\r
import eu.etaxonomy.cdm.model.common.IReferencedEntity;\r
import eu.etaxonomy.cdm.model.common.IdentifiableEntity;\r
@XmlRootElement(name = "TaxonomicTree")\r
@Entity\r
@Audited\r
-public class TaxonomicTree extends IdentifiableEntity implements IReferencedEntity{\r
+public class TaxonomicTree extends IdentifiableEntity implements IReferencedEntity, ITreeNode{\r
private static final long serialVersionUID = -753804821474209635L;\r
private static final Logger logger = Logger.getLogger(TaxonomicTree.class);\r
\r
- @XmlElement(name = "name")\r
- @XmlIDREF\r
- @XmlSchemaType(name = "IDREF")\r
+ @XmlElement(name = "Name")\r
@OneToOne(fetch = FetchType.LAZY)\r
@Cascade({CascadeType.SAVE_UPDATE})\r
+ @JoinColumn(name = "name_id", referencedColumnName = "id")\r
+ @IndexedEmbedded\r
private LanguageString name;\r
\r
// @XmlElementWrapper(name = "allNodes")\r
super();\r
}\r
\r
- \r
+\r
+ /* (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.model.taxon.ITreeNode#addChildNode(eu.etaxonomy.cdm.model.taxon.TaxonNode, eu.etaxonomy.cdm.model.reference.ReferenceBase, java.lang.String, eu.etaxonomy.cdm.model.taxon.Synonym)\r
+ */\r
+ public TaxonNode addChildNode(TaxonNode childNode, ReferenceBase citation,\r
+ String microCitation, Synonym synonymToBeUsed) {\r
+ \r
+ rootNodes.add(childNode);\r
+ childNode.setParent(null);\r
+ childNode.setTaxonomicTree(this);\r
+ childNode.setReference(citation);\r
+ childNode.setMicroReference(microCitation);\r
+ childNode.setSynonymToBeUsed(synonymToBeUsed);\r
+ \r
+ return childNode;\r
+ }\r
+\r
+ /* (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.model.taxon.ITreeNode#addChildTaxon(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.reference.ReferenceBase, java.lang.String, eu.etaxonomy.cdm.model.taxon.Synonym)\r
+ */\r
+ public TaxonNode addChildTaxon(Taxon taxon, ReferenceBase citation,\r
+ String microCitation, Synonym synonymToBeUsed) {\r
+ return addChildNode(new TaxonNode(taxon), citation, microCitation, synonymToBeUsed);\r
+ }\r
\r
/**\r
* Adds a taxon to the taxonomic tree and makes it one of the root nodes.\r
* @param taxon\r
* @param synonymUsed\r
* @return\r
+ * @deprecated use addChildNode() or addChildTaxon() instead\r
*/\r
public TaxonNode addRoot(Taxon taxon, Synonym synonymUsed, ReferenceBase reference){\r
TaxonNode newRoot = new TaxonNode(taxon, this);\r
rootNodes.add(newRoot);\r
newRoot.setParent(null);\r
- newRoot.setTaxonomicView(this);\r
+ newRoot.setTaxonomicTree(this);\r
newRoot.setTaxon(taxon);\r
newRoot.setReferenceForParentChildRelation(reference);\r
newRoot.setSynonymToBeUsed(synonymUsed);\r
return newRoot;\r
}\r
\r
- public boolean removeRoot(TaxonNode node){\r
- boolean result = false;\r
- if(node.isRootNode()){\r
\r
- for (TaxonNode childNode : node.getChildNodes()){\r
- node.removeChild(childNode);\r
- }\r
- result = rootNodes.remove(node);\r
-\r
- node.getTaxon().removeTaxonNode(node);\r
- node.setParent(null);\r
- node.setTaxonomicView(null);\r
- node.setTaxon(null); \r
+ /* (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.model.taxon.ITreeNode#removeChildNode(eu.etaxonomy.cdm.model.taxon.TaxonNode)\r
+ */\r
+ public boolean deleteChildNode(TaxonNode node) {\r
+ boolean result = removeChildNode(node);\r
+ \r
+ node.getTaxon().removeTaxonNode(node);\r
+ node.setTaxon(null); \r
+ \r
+ ArrayList<TaxonNode> childNodes = new ArrayList<TaxonNode>(node.getChildNodes()); \r
+ for (TaxonNode childNode : childNodes){\r
+ node.deleteChildNode(childNode);\r
+ }\r
+ return result;\r
+ }\r
+ \r
+ /**\r
+ * \r
+ * @param node\r
+ * @return\r
+ */\r
+ protected boolean removeChildNode(TaxonNode node){\r
+ boolean result = false;\r
+ \r
+ if(!rootNodes.contains(node)){\r
+ throw new IllegalArgumentException("TaxonNode is a not a root node of this taxonomic tree");\r
}\r
+ \r
+ result = rootNodes.remove(node);\r
+\r
+ node.setParent(null);\r
+ node.setTaxonomicTree(null);\r
+ \r
return result;\r
}\r
\r
+ /**\r
+ * \r
+ * @param node\r
+ * @return\r
+ * @deprecated use removeChildNode() instead\r
+ */\r
+ public boolean removeRoot(TaxonNode node){\r
+ return deleteChildNode(node);\r
+ }\r
+ \r
/**\r
* Appends an existing root node to another node of this tree. The existing root node becomes \r
* an ordinary node.\r
if (otherNode.equals(root)){\r
throw new IllegalArgumentException("root node and other node must not be the same");\r
}\r
- otherNode.addChildNote(root, ref, microReference, null);\r
- getRootNodes().remove(root);\r
+ otherNode.addChildNode(root, ref, microReference, null);\r
+ //getRootNodes().remove(root);\r
}\r
\r
// public void makeThisNodePartOfOtherView(TaxonNode oldRoot, TaxonNode replacedNodeInOtherView, ReferenceBase reference, String microReference){\r
* one parent. <Br>\r
* If the parent-child relationship between these two taxa already exists nothing is changed. Only \r
* citation and microcitation are overwritten by the new values if these values are not null.\r
+ * \r
+ * TODO this looks like very specialized functionality. Upon examination, it turned out that it is used\r
+ * solely in imports and it also looks like it is very tightly coupled with the way the imports are implemented.\r
+ * As an advocat for a clean API, I would very much recommend not having this in the library itself as I can \r
+ * not really see who else will be needing this.\r
+ * - n.hoffmann\r
+ * \r
* @param parent\r
* @param child\r
* @param citation\r
//no multiple parents are allowed in the tree\r
if (childNode != null && childNode.getParent() != null){\r
//...different to the parent taxon throw exception\r
- if (! childNode.getParent().getTaxon().equals(parent) ){\r
- throw new IllegalStateException("The child taxon is already part of the tree but has an other parent taxon than the one than the parent to be added. Child: " + child.toString() + ", new parent:" + parent.toString() + ", old parent: " + childNode.getParent().getTaxon().toString()) ;\r
+ if ((childNode.getParent() instanceof TaxonNode) && !((TaxonNode)childNode.getParent()).getTaxon().equals(parent) ){\r
+ throw new IllegalStateException("The child taxon is already part of the tree but has an other parent taxon than the one than the parent to be added. Child: " + child.toString() + ", new parent:" + parent.toString() + ", old parent: " + ((TaxonNode) childNode.getParent()).getTaxon().toString()) ;\r
//... same as the parent taxon do nothing but overwriting citation and microCitation\r
}else{\r
handleCitationOverwrite(childNode, citation, microCitation);\r
\r
//add parent node if not exist\r
if (parentNode == null){\r
- parentNode = this.addRoot(parent, null, null);\r
+ parentNode = this.addChildTaxon(parent, null, null, null);\r
}\r
\r
//add child if not exists\r
if (childNode == null){\r
- parentNode.addChild(child, citation, microCitation);\r
+ parentNode.addChildTaxon(child, citation, microCitation, null);\r
}else{\r
//child is still root\r
//TODO test if child is rootNode otherwise thrwo IllegalStateException\r
* @return\r
*/\r
@Transient\r
- @Deprecated\r
public Set<TaxonNode> getAllNodes() {\r
Set<TaxonNode> allNodes = new HashSet<TaxonNode>();\r
\r
for(TaxonNode rootNode : getRootNodes()){\r
- allNodes.addAll(rootNode.getAllNodes());\r
+ allNodes.addAll(rootNode.getDescendants());\r
}\r
\r
return allNodes;\r
* \r
* @param rank may be null\r
* @return\r
+ * @deprecated use {@link ITaxonTreeService.loadRankSpecificRootNode} or {@link ITaxonomicTreeDao.loadRankSpecificRootNode} instead\r
*/\r
+ @Deprecated\r
public List<TaxonNode> getRankSpecificRootNodes(Rank rank) {\r
List<TaxonNode> baseNodes = new ArrayList<TaxonNode>();\r
if(rank != null){\r
return rootNodes;\r
}\r
\r
+ /* (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.model.taxon.ITreeNode#hasChildNodes()\r
+ */\r
+ public boolean hasChildNodes() {\r
+ return getRootNodes().size() > 0;\r
+ }\r
}\r
BGBM BDI Projects / cdmlib.git / blobdiff