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[cdmlib.git] / .gitattributes
diff --git a/.gitattributes b/.gitattributes
index 8d252d8f0e47f8d03931899e053e62719c12d598..c08ebd7cb9bc80cec3f831bb3fb67a167fe776aa 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -2,7 +2,6 @@
 /INSTALL.TXT -text
 /LICENSE.TXT -text
 app-import/pom.xml -text
-app-import/src/main/java/eu/etaxonomy/cdm/app/abcdImport/ABCD206Activator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/abcdImport/SpecimenImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/abcdImport/SynthesysCacheActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/BerlinModelImportActivator.java -text
@@ -20,6 +19,8 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/jaxb/CdmDiffActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/jaxb/CdmExportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/SDDSources.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/ViolaActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/synthesysImport/SpecimenImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/synthesysImport/SynthesysCacheActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/tcs/PalmaeActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/tcs/PalmaeTaxonXImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/tcs/TcsSources.java -text
@@ -29,6 +30,7 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/util/TestTransaction.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/viennaImport/ViennaActivator.java -text
 app-import/src/main/resources/Asteraceae[!!-~]Specimen[!!-~]Images[!!-~]Vienna.xls -text
 app-import/src/main/resources/AsteraceaeSpecimenImagesVienna.mdb -text
+app-import/src/main/resources/SDD-Test-Simple.xml -text
 app-import/src/main/resources/arecaceae.rdf -text
 app-import/src/main/resources/log4j.properties -text
 app-import/src/main/resources/specimenABCD/CDMtabular9c04a474e2_23_09_08.xls -text
@@ -226,6 +228,11 @@ cdmlib-commons/src/test/java/eu/etaxonomy/cdm/test/unit/CdmUnitTestBase.java -te
 cdmlib-io/LICENSE.TXT -text
 cdmlib-io/README.TXT -text
 cdmlib-io/pom.xml -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/abcd206/AbcdIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/abcd206/SpecimenImportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/abcd206/SpecimenIoBase.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/abcd206/UnitsGatheringArea.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/abcd206/UnitsGatheringEvent.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelAuthorIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelFactsIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelIOBase.java -text
@@ -251,6 +258,7 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/ICdmImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/IImportConfigurator.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/ImportConfiguratorBase.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/ImportHelper.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/ImportWrapper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/MapWrapper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/Source.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/SourceConnectionException.java -text
@@ -267,6 +275,11 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/LsInputImpl.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/sdd/SDDDescriptionIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/sdd/SDDImportConfigurator.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/sdd/SDDIoBase.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/synthesys/SpecimenImportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/synthesys/SpecimenIoBase.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/synthesys/SynthesysIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/synthesys/UnitsGatheringArea.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/synthesys/UnitsGatheringEvent.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/SimpleSpecimen.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/TaxonXDescriptionIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/TaxonXImportConfigurator.java -text
@@ -283,27 +296,18 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcs/TcsTaxonNameIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcs/TcsTaxonNameRelationsIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcs/TcsTaxonRelationsIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcs/TcsTransformer.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/unitsPortal/AbcdIO.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/unitsPortal/SpecimenImportConfigurator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/unitsPortal/SpecimenIoBase.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/unitsPortal/TestABCD.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/unitsPortal/UnitsGatheringArea.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/unitsPortal/UnitsGatheringEvent.java -text
-cdmlib-io/src/main/java/tcsxml/CdmIoXmlMapperBase.java -text
-cdmlib-io/src/main/java/tcsxml/CdmTextElementMapper.java -text
-cdmlib-io/src/main/java/tcsxml/CdmUnclearMapper.java -text
-cdmlib-io/src/main/java/tcsxml/DefaultTcsXmlPlaceholders.java -text
-cdmlib-io/src/main/java/tcsxml/ITcsXmlPlaceholderClass.java -text
-cdmlib-io/src/main/java/tcsxml/TcsTaxonIO.java -text
-cdmlib-io/src/main/java/tcsxml/TcsTaxonRelationsIO.java -text
-cdmlib-io/src/main/java/tcsxml/TcsXmlImportConfigurator.java -text
-cdmlib-io/src/main/java/tcsxml/TcsXmlIoBase.java -text
-cdmlib-io/src/main/java/tcsxml/TcsXmlMetaDataIO.java -text
-cdmlib-io/src/main/java/tcsxml/TcsXmlPublicationsIO.java -text
-cdmlib-io/src/main/java/tcsxml/TcsXmlSpecimensIO.java -text
-cdmlib-io/src/main/java/tcsxml/TcsXmlTaxonNameIO.java -text
-cdmlib-io/src/main/java/tcsxml/TcsXmlTaxonNameRelationsIO.java -text
-cdmlib-io/src/main/java/tcsxml/TcsXmlTransformer.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/DefaultTcsXmlPlaceholders.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/ITcsXmlPlaceholderClass.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlImportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlIoBase.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlMetaDataIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlPublicationsIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlSpecimensIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlTaxonIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlTaxonNameIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlTaxonNameRelationsIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlTaxonRelationsIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlTransformer.java -text
 cdmlib-io/src/main/resources/log4j.properties -text
 cdmlib-io/src/site/site.xml -text
 cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/test/function/TestDatabase.java -text
@@ -329,6 +333,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/TeamOrPersonBase.java -t
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/AnnotatableEntity.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Annotation.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/AnnotationType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/CdmBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/EventBase.java -text
@@ -356,6 +361,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/NoDefinedTermClassExcep
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OrderedTermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OrderedTermVocabulary.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OriginalSource.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/PartialUserType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ReferencedEntityBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/RelationshipBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/RelationshipTermBase.java -text
@@ -455,6 +461,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/Collection.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivationEvent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivationEventType.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivedUnit.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivedUnitBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DeterminationEvent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DeterminationModifier.java -text
@@ -532,6 +539,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/INonViralNameParser.
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/NonViralNameParserImpl.java -text
 cdmlib-model/src/main/resources/log4j.properties -text
 cdmlib-model/src/main/resources/terms/AbsenceTerm.csv -text
+cdmlib-model/src/main/resources/terms/AnnotationType.csv -text
 cdmlib-model/src/main/resources/terms/Continent.csv -text
 cdmlib-model/src/main/resources/terms/DerivationEventType.csv -text
 cdmlib-model/src/main/resources/terms/DeterminationModifier.csv -text
@@ -658,6 +666,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/ID
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IFeatureDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IFeatureNodeDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IFeatureTreeDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IStatisticalMeasurementValueDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/agent/AgentDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/AnnotatableDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmEntityDaoBase.java -text
@@ -676,6 +685,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/desc
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/FeatureDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/FeatureNodeDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/FeatureTreeDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/StatisticalMeasurementValueDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationPartHibernateImpl.java -text