(no commit message)

[cdmlib.git] / cdmlib-model / src / main / java / eu / etaxonomy / cdm / model / name / SpecimenTypeDesignation.java

diff --git a/cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/SpecimenTypeDesignation.java b/cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/SpecimenTypeDesignation.java
index aac0bec68592939b2394d17131eee862e1190e6b..dac6973057b934f4bec583ee5ca53a1a0bbfbb5f 100644 (file)
--- a/cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/SpecimenTypeDesignation.java
+++ b/cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/SpecimenTypeDesignation.java
@@ -11,7 +11,6 @@ package eu.etaxonomy.cdm.model.name;
 
 
 import eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase;
-import eu.etaxonomy.cdm.model.occurrence.Specimen;
 import eu.etaxonomy.cdm.model.reference.ReferenceBase;
 import eu.etaxonomy.cdm.model.common.ReferencedEntityBase;
 import org.apache.log4j.Logger;
@@ -19,26 +18,69 @@ import org.hibernate.annotations.Cascade;
 import org.hibernate.annotations.CascadeType;
 
 import java.util.*;
+
 import javax.persistence.*;
+import javax.xml.bind.annotation.XmlAccessType;
+import javax.xml.bind.annotation.XmlAccessorType;
+import javax.xml.bind.annotation.XmlElement;
+import javax.xml.bind.annotation.XmlElementWrapper;
+import javax.xml.bind.annotation.XmlIDREF;
+import javax.xml.bind.annotation.XmlSchemaType;
+import javax.xml.bind.annotation.XmlType;
 
 /**
- * {only for typified names which have the "species" rank or below}
+ * Taxon names which have the a rank "species" or below can only be typified
+ * by specimens. Above the species rank the taxon names are generally typified
+ * by taxon names with lower rank (species for genus and genus for family) but
+ * can also be typified directly by specimens.
+ * 
  * @author m.doering
  * @version 1.0
  * @created 08-Nov-2007 13:06:52
  */
+@XmlAccessorType(XmlAccessType.FIELD)
+@XmlType(name = "SpecimenTypeDesignation", propOrder = {
+    "homotypicalGroup",
+    "typeSpecimen",
+    "typeStatus",
+    "typifiedNames"
+})
 @Entity
 public class SpecimenTypeDesignation extends ReferencedEntityBase {
+       
        static Logger logger = Logger.getLogger(SpecimenTypeDesignation.class);
+       
+       @XmlElement(name = "HomotypicalGroup")
+       @XmlIDREF
+       @XmlSchemaType(name = "IDREF")
        private HomotypicalGroup homotypicalGroup;
+       
+       @XmlElement(name = "TypeSpecimen")
+//     @XmlIDREF
+//     @XmlSchemaType(name = "IDREF")
        private DerivedUnitBase typeSpecimen;
+       
+       @XmlElement(name = "TypeStatus")
        private TypeDesignationStatus typeStatus;
-
-       public SpecimenTypeDesignation(HomotypicalGroup homotypicalGroup,
-                       DerivedUnitBase specimen, TypeDesignationStatus status,
-                       ReferenceBase citation, String citationMicroReference, String originalNameString) {
+       
+       @XmlElementWrapper(name = "TypifiedNames")
+       @XmlElement(name = "TypifiedName")
+       @XmlIDREF
+       @XmlSchemaType(name = "IDREF")
+       private Set<TaxonNameBase> typifiedNames = new HashSet<TaxonNameBase>();
+       
+       public static SpecimenTypeDesignation NewInstance(DerivedUnitBase specimen, TypeDesignationStatus status,
+                       ReferenceBase citation, String citationMicroReference, String originalNameString){
+               SpecimenTypeDesignation specTypeDesig = new SpecimenTypeDesignation(specimen, status, citation, citationMicroReference, originalNameString);
+               return specTypeDesig;
+       }
+       
+       protected SpecimenTypeDesignation(){
+               
+       }
+       
+       private SpecimenTypeDesignation(DerivedUnitBase specimen, TypeDesignationStatus status, ReferenceBase citation, String citationMicroReference, String originalNameString) {
                super(citation, citationMicroReference, originalNameString);
-               this.setHomotypicalGroup(homotypicalGroup);
                this.setTypeSpecimen(specimen);
                this.setTypeStatus(status);
        }
@@ -49,13 +91,6 @@ public class SpecimenTypeDesignation extends ReferencedEntityBase {
                return homotypicalGroup;
        }
        public void setHomotypicalGroup(HomotypicalGroup newHomotypicalGroup) {
-               if(this.homotypicalGroup == newHomotypicalGroup) return;
-               if (homotypicalGroup != null) { 
-                       homotypicalGroup.typeDesignations.remove(this);
-               }
-               if (newHomotypicalGroup!= null) { 
-                       newHomotypicalGroup.typeDesignations.add(this);
-               }
                this.homotypicalGroup = newHomotypicalGroup;            
        }
 
@@ -77,4 +112,21 @@ public class SpecimenTypeDesignation extends ReferencedEntityBase {
                this.typeStatus = typeStatus;
        }
 
+       /**
+        * @return the typifiedNames
+        */
+       @ManyToMany
+       public Set<TaxonNameBase> getTypifiedNames() {
+               return typifiedNames;
+       }
+
+       /**
+        * @param typifiedNames the typifiedNames to set
+        */
+       public void setTypifiedNames(Set<TaxonNameBase> typifiedNames) {
+               this.typifiedNames = typifiedNames;
+       }
+       
+       
+
 }
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