import org.apache.commons.lang3.StringUtils;
import eu.etaxonomy.cdm.common.CdmUtils;
+import eu.etaxonomy.cdm.format.ICdmFormatter.FormatKey;
+import eu.etaxonomy.cdm.format.description.CategoricalDataFormatter;
+import eu.etaxonomy.cdm.format.description.DescriptionElementFormatter;
+import eu.etaxonomy.cdm.format.description.QuantitativeDataFormatter;
import eu.etaxonomy.cdm.format.occurrences.DistanceStringFormatter;
import eu.etaxonomy.cdm.model.agent.AgentBase;
import eu.etaxonomy.cdm.model.common.CdmBase;
import eu.etaxonomy.cdm.model.common.RelationshipBase;
import eu.etaxonomy.cdm.model.common.RelationshipTermBase;
import eu.etaxonomy.cdm.model.common.TimePeriod;
+import eu.etaxonomy.cdm.model.description.CategoricalData;
import eu.etaxonomy.cdm.model.description.CommonTaxonName;
import eu.etaxonomy.cdm.model.description.DescriptionBase;
import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
import eu.etaxonomy.cdm.model.description.DescriptionElementSource;
import eu.etaxonomy.cdm.model.description.Distribution;
import eu.etaxonomy.cdm.model.description.IDescribable;
+import eu.etaxonomy.cdm.model.description.IndividualsAssociation;
import eu.etaxonomy.cdm.model.description.KeyStatement;
import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
+import eu.etaxonomy.cdm.model.description.QuantitativeData;
import eu.etaxonomy.cdm.model.description.SpecimenDescription;
+import eu.etaxonomy.cdm.model.description.StateData;
+import eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue;
import eu.etaxonomy.cdm.model.description.TaxonDescription;
import eu.etaxonomy.cdm.model.description.TaxonInteraction;
import eu.etaxonomy.cdm.model.description.TaxonNameDescription;
+import eu.etaxonomy.cdm.model.description.TemporalData;
import eu.etaxonomy.cdm.model.description.TextData;
import eu.etaxonomy.cdm.model.location.NamedArea;
import eu.etaxonomy.cdm.model.name.HomotypicalGroup;
resultString = ((LanguageStringBase) element).getText();
}else if (element instanceof DescriptionElementBase) {
resultString = getCache((DescriptionElementBase) element, defaultLanguage);
+ }else if (element instanceof StateData) {
+ resultString = getCache((StateData) element, defaultLanguage);
+ }else if (element instanceof StatisticalMeasurementValue) {
+ resultString = getCache((StatisticalMeasurementValue) element, defaultLanguage);
}else if (element instanceof RelationshipBase<?, ?, ?>) {
resultString = getCache((RelationshipBase<?, ?, ?>) element, defaultLanguage);
}else if (element instanceof TypeDesignationBase<?>) {
private static String getCache(TaxonNode taxonNode) {
String result = "";
+ Taxon taxon = taxonNode.getTaxon();
+ if (taxon != null){
+ result = taxon.getName() != null ? taxon.getName().getTitleCache() : taxon.getTitleCache();
+ }
+ final String invisible = "Invisible root of ";
String parentStr;
TaxonNode parentNode = taxonNode.getParent();
if (parentNode == null){
- parentStr = "Invisible root of ";
+ parentStr = invisible;
}else{
Taxon parentTaxon = parentNode.getTaxon();
if (parentTaxon == null){
- parentStr = "Root of ";
+ parentStr = " (root of ";
}else{
TaxonName parentName = parentTaxon.getName();
if (parentName == null){
- parentStr = "Child of " + parentTaxon.getTitleCache();
+ parentStr = " (child of " + parentTaxon.getTitleCache();
}else{
- parentStr = "Child of " + parentName.getTitleCache();
+ parentStr = " (child of " + parentName.getTitleCache();
}
parentStr += " in ";
}
classificationStr = "-no classification-"; //should not happen
}
- result = CdmUtils.concat("", parentStr, classificationStr);
+ result = CdmUtils.concat("", parentStr, classificationStr, parentStr == invisible? "" : ")");
return result;
}
private static String getCache(DescriptionElementBase element,
Language defaultLanguage) {
- String mainElementLabel= null;
DescriptionBase<?> descr = element.getInDescription();
descr = CdmBase.deproxy(descr);
- if (descr != null){
- if (descr.isInstanceOf(TaxonDescription.class)){
- Taxon taxon = CdmBase.deproxy(descr, TaxonDescription.class).getTaxon();
- if (taxon != null){
- mainElementLabel = taxon.getTitleCache();
- }
- }else if (descr.isInstanceOf(SpecimenDescription.class)){
- SpecimenOrObservationBase<?> specimen = CdmBase.deproxy(descr, SpecimenDescription.class).getDescribedSpecimenOrObservation();
- if (specimen != null){
- mainElementLabel = specimen.getTitleCache();
- }
- }else if (descr.isInstanceOf(TaxonNameDescription.class)){
- TaxonName name = CdmBase.deproxy(descr, TaxonNameDescription.class).getTaxonName();
- if (name != null){
- mainElementLabel = name.getTitleCache();
- }
- }
- }
+ String mainElementLabel = mainElementLabel(descr);
String cache = null;
+ //TextData
if (element instanceof TextData) {
- //cache = ((TextData) element).getText(language);
- cache = "Text Data";
- }
- if (element instanceof CommonTaxonName) {
+ LanguageString text = ((TextData) element).getPreferredLanguageString(defaultLanguage);
+ if (text != null) {
+ cache = text.getText();
+ }
+ cache = cache == null || isBlank(cache)? "empty" : StringUtils.truncate(cache, 20);
+ //CommonTaxonName
+ }else if (element instanceof CommonTaxonName) {
cache = ((CommonTaxonName) element).getName();
- }
- if (element instanceof TaxonInteraction) {
+ //TaxonInteraction
+ }else if (element instanceof TaxonInteraction) {
Taxon taxon2 = ((TaxonInteraction) element).getTaxon2();
if(taxon2 != null && taxon2.getName() != null){
cache = taxon2.getName().getTitleCache();
}else{
cache = "No taxon chosen";
}
- }
- if (element instanceof Distribution) {
+ //IndividualsAssociation
+ }else if (element instanceof IndividualsAssociation) {
+ SpecimenOrObservationBase<?> unit = ((IndividualsAssociation) element).getAssociatedSpecimenOrObservation();
+ if(unit != null){
+ cache = unit.getIdentityCache();
+ if (isBlank(cache)) {
+ cache = unit.getTitleCache();
+ }
+ }else{
+ cache = "No unit chosen";
+ }
+ //Distribution
+ }else if (element instanceof Distribution) {
Distribution distribution = (Distribution) element;
NamedArea area = distribution.getArea();
cache += ", " + status.getLabel();
}
}
+ //CategoricalData
+ }else if (element instanceof CategoricalData) {
+ CategoricalData categoricalData = (CategoricalData) element;
+
+ cache = CategoricalDataFormatter.NewInstance(new FormatKey[] {}).format(categoricalData);
+ //QuantitativeData
+ }else if (element instanceof QuantitativeData) {
+ QuantitativeData quantitativeData = (QuantitativeData) element;
+
+ cache = QuantitativeDataFormatter.NewInstance(new FormatKey[] {}).format(quantitativeData);
+ //CategoricalData
+ }else if (element instanceof TemporalData) {
+ TemporalData temporalData = (TemporalData) element;
+ cache = temporalData.toString();
}
+
String result = cache == null ? "" : cache;
+ result = concatWithMainElement(mainElementLabel, result);
+ return result;
+ }
+
+ private static String getCache(StateData stateData,
+ Language defaultLanguage) {
+ String cache = null;
+ if (stateData.getState() != null) {
+ Representation rep = stateData.getState().getPreferredRepresentation(defaultLanguage);
+ if (rep != null) {
+ cache = rep.getLabel();
+ }
+ }
+ cache = isBlank(cache)? stateData.getUuid().toString() : cache;
+ DescriptionBase<?> desc = stateData.getCategoricalData() == null? null : stateData.getCategoricalData().getInDescription();
+ String mainElementLabel = mainElementLabel(desc);
+ return concatWithMainElement(mainElementLabel, cache);
+ }
+
+ private static String getCache(StatisticalMeasurementValue smv, Language defaultLanguage) {
+ String cache = null;
+ if (smv.getType() != null) {
+ Representation rep = smv.getType().getPreferredRepresentation(defaultLanguage);
+ if (rep != null) {
+ cache = rep.getLabel();
+ }
+ }
+ if (smv.getValue() != null) {
+ cache = CdmUtils.concat("=", cache, smv.getValue().toString());
+ }
+ cache = isBlank(cache)? smv.getUuid().toString() : cache;
+ DescriptionBase<?> desc = smv.getQuantitativeData() == null? null : smv.getQuantitativeData().getInDescription();
+ String mainElementLabel = mainElementLabel(desc);
+ return concatWithMainElement(mainElementLabel, cache);
+ }
+
+ /**
+ * Returns the label of the main element (taxon, specimen or name) for
+ * the given description.
+ */
+ private static String mainElementLabel(DescriptionBase<?> descr) {
+ String mainElementLabel = null;
+ if (descr != null){
+ if (descr.isInstanceOf(TaxonDescription.class)){
+ Taxon taxon = CdmBase.deproxy(descr, TaxonDescription.class).getTaxon();
+ if (taxon != null){
+ mainElementLabel = taxon.getTitleCache();
+ }
+ }else if (descr.isInstanceOf(SpecimenDescription.class)){
+ SpecimenOrObservationBase<?> specimen = CdmBase.deproxy(descr, SpecimenDescription.class).getDescribedSpecimenOrObservation();
+ if (specimen != null){
+ mainElementLabel = specimen.getTitleCache();
+ }
+ }else if (descr.isInstanceOf(TaxonNameDescription.class)){
+ TaxonName name = CdmBase.deproxy(descr, TaxonNameDescription.class).getTaxonName();
+ if (name != null){
+ mainElementLabel = name.getTitleCache();
+ }
+ }
+ }
+ return mainElementLabel;
+ }
+
+ private static String concatWithMainElement(String mainElementLabel, String result) {
if (isNotBlank(mainElementLabel)){
result = CdmUtils.concat(" ", result, "(" + mainElementLabel + ")");
}
return result;
}
-
}
BGBM BDI Projects / cdmlib.git / blobdiff