-// $Id$\r
/**\r
* Copyright (C) 2007 EDIT\r
- * European Distributed Institute of Taxonomy \r
+ * European Distributed Institute of Taxonomy\r
* http://www.e-taxonomy.eu\r
- * \r
+ *\r
* The contents of this file are subject to the Mozilla Public License Version 1.1\r
* See LICENSE.TXT at the top of this package for the full license terms.\r
*/\r
\r
-\r
package eu.etaxonomy.cdm.api.application;\r
\r
+import java.util.EnumSet;\r
import java.util.List;\r
+import java.util.Properties;\r
import java.util.UUID;\r
\r
import org.apache.log4j.Logger;\r
import org.springframework.beans.MutablePropertyValues;\r
import org.springframework.beans.factory.config.BeanDefinition;\r
import org.springframework.beans.factory.xml.XmlBeanDefinitionReader;\r
+import org.springframework.context.ApplicationListener;\r
import org.springframework.context.support.AbstractApplicationContext;\r
-import org.springframework.context.support.GenericApplicationContext;\r
import org.springframework.core.io.ClassPathResource;\r
import org.springframework.core.io.Resource;\r
import org.springframework.security.authentication.ProviderManager;\r
+import org.springframework.security.authentication.UsernamePasswordAuthenticationToken;\r
+import org.springframework.security.core.Authentication;\r
+import org.springframework.security.core.context.SecurityContext;\r
+import org.springframework.security.core.context.SecurityContextHolder;\r
import org.springframework.transaction.PlatformTransactionManager;\r
-import org.springframework.transaction.TransactionDefinition;\r
import org.springframework.transaction.TransactionStatus;\r
-import org.springframework.transaction.support.DefaultTransactionDefinition;\r
\r
-import eu.etaxonomy.cdm.api.application.eclipse.EclipseRcpSaveGenericApplicationContext;\r
import eu.etaxonomy.cdm.api.conversation.ConversationHolder;\r
import eu.etaxonomy.cdm.api.service.IAgentService;\r
+import eu.etaxonomy.cdm.api.service.IAnnotationService;\r
+import eu.etaxonomy.cdm.api.service.IClassificationService;\r
import eu.etaxonomy.cdm.api.service.ICollectionService;\r
import eu.etaxonomy.cdm.api.service.ICommonService;\r
import eu.etaxonomy.cdm.api.service.IDatabaseService;\r
import eu.etaxonomy.cdm.api.service.IDescriptionService;\r
+import eu.etaxonomy.cdm.api.service.IDescriptiveDataSetService;\r
+import eu.etaxonomy.cdm.api.service.IEntityConstraintViolationService;\r
+import eu.etaxonomy.cdm.api.service.IEntityValidationService;\r
+import eu.etaxonomy.cdm.api.service.IEventBaseService;\r
import eu.etaxonomy.cdm.api.service.IFeatureNodeService;\r
import eu.etaxonomy.cdm.api.service.IFeatureTreeService;\r
+import eu.etaxonomy.cdm.api.service.IGrantedAuthorityService;\r
+import eu.etaxonomy.cdm.api.service.IGroupService;\r
+import eu.etaxonomy.cdm.api.service.IIdentificationKeyService;\r
import eu.etaxonomy.cdm.api.service.ILocationService;\r
import eu.etaxonomy.cdm.api.service.IMediaService;\r
+import eu.etaxonomy.cdm.api.service.IMetadataService;\r
import eu.etaxonomy.cdm.api.service.INameService;\r
import eu.etaxonomy.cdm.api.service.IOccurrenceService;\r
+import eu.etaxonomy.cdm.api.service.IPolytomousKeyNodeService;\r
+import eu.etaxonomy.cdm.api.service.IPolytomousKeyService;\r
+import eu.etaxonomy.cdm.api.service.IPreferenceService;\r
+import eu.etaxonomy.cdm.api.service.IProgressMonitorService;\r
import eu.etaxonomy.cdm.api.service.IReferenceService;\r
-import eu.etaxonomy.cdm.api.service.IService;\r
+import eu.etaxonomy.cdm.api.service.IRegistrationService;\r
+import eu.etaxonomy.cdm.api.service.IRightsService;\r
import eu.etaxonomy.cdm.api.service.ITaxonNodeService;\r
import eu.etaxonomy.cdm.api.service.ITaxonService;\r
-import eu.etaxonomy.cdm.api.service.ITaxonTreeService;\r
import eu.etaxonomy.cdm.api.service.ITermService;\r
import eu.etaxonomy.cdm.api.service.IUserService;\r
import eu.etaxonomy.cdm.api.service.IVocabularyService;\r
-import eu.etaxonomy.cdm.common.IProgressMonitor;\r
-import eu.etaxonomy.cdm.common.NullProgressMonitor;\r
+import eu.etaxonomy.cdm.api.service.molecular.IAmplificationService;\r
+import eu.etaxonomy.cdm.api.service.molecular.IPrimerService;\r
+import eu.etaxonomy.cdm.api.service.molecular.ISequenceService;\r
+import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;\r
+import eu.etaxonomy.cdm.common.monitor.NullProgressMonitor;\r
+import eu.etaxonomy.cdm.common.monitor.SubProgressMonitor;\r
import eu.etaxonomy.cdm.database.CdmPersistentDataSource;\r
import eu.etaxonomy.cdm.database.DataSourceNotFoundException;\r
import eu.etaxonomy.cdm.database.DbSchemaValidation;\r
import eu.etaxonomy.cdm.database.ICdmDataSource;\r
import eu.etaxonomy.cdm.model.common.CdmBase;\r
-import eu.etaxonomy.cdm.model.common.CdmMetaData;\r
-import eu.etaxonomy.cdm.model.common.DefinedTermBase;\r
-import eu.etaxonomy.cdm.model.common.User;\r
-import eu.etaxonomy.cdm.model.common.init.TermNotFoundException;\r
-\r
+import eu.etaxonomy.cdm.model.term.DefinedTermBase;\r
+import eu.etaxonomy.cdm.persistence.hibernate.HibernateConfiguration;\r
+import eu.etaxonomy.cdm.persistence.hibernate.permission.CRUD;\r
+import eu.etaxonomy.cdm.persistence.hibernate.permission.ICdmPermissionEvaluator;\r
\r
/**\r
* @author a.mueller\r
- *\r
*/\r
-public class CdmApplicationController implements ICdmApplicationConfiguration{\r
+public class CdmApplicationController implements ICdmRepository {\r
private static final Logger logger = Logger.getLogger(CdmApplicationController.class);\r
- \r
+\r
public static final String DEFAULT_APPLICATION_CONTEXT_RESOURCE = "/eu/etaxonomy/cdm/defaultApplicationContext.xml";\r
- \r
+\r
public AbstractApplicationContext applicationContext;\r
- private ICdmApplicationConfiguration configuration; \r
- private Resource applicationContextResource;\r
-\r
- private IProgressMonitor progressMonitor;\r
- \r
- final static DbSchemaValidation defaultDbSchemaValidation = DbSchemaValidation.VALIDATE;\r
- \r
- \r
- \r
+ protected ICdmRepository configuration;\r
+ private final Resource applicationContextResource;\r
+\r
+ private final IProgressMonitor progressMonitor;\r
+\r
+ final protected static DbSchemaValidation defaultDbSchemaValidation = DbSchemaValidation.VALIDATE;\r
+\r
+\r
/**\r
- * Constructor, opens an spring 2.5 ApplicationContext by using the default data source\r
+ * Constructor, opens a spring ApplicationContext by using the default data source\r
+ *\r
+ * @throws DataSourceNotFoundException\r
*/\r
- public static CdmApplicationController NewInstance() throws DataSourceNotFoundException, TermNotFoundException {\r
+ public static CdmApplicationController NewInstance() throws DataSourceNotFoundException{\r
logger.info("Start CdmApplicationController with default data source");\r
- CdmPersistentDataSource dataSource = CdmPersistentDataSource.NewDefaultInstance();\r
+ CdmPersistentDataSource dataSource = getDefaultDatasource();\r
DbSchemaValidation dbSchemaValidation = defaultDbSchemaValidation;\r
return CdmApplicationController.NewInstance(null, dataSource, dbSchemaValidation, false);\r
}\r
- \r
+\r
+\r
/**\r
- * Constructor, opens an spring 2.5 ApplicationContext by using the default data source\r
- * @param dbSchemaValidation validation type for database schema\r
+ * Constructor, opens a spring ApplicationContext by using the default data source\r
+ *\r
+ * @param dbSchemaValidation\r
+ * validation type for database schema\r
+ * @throws DataSourceNotFoundException\r
*/\r
- public static CdmApplicationController NewInstance(DbSchemaValidation dbSchemaValidation) throws DataSourceNotFoundException, TermNotFoundException {\r
+ public static CdmApplicationController NewInstance(DbSchemaValidation dbSchemaValidation) throws DataSourceNotFoundException{\r
logger.info("Start CdmApplicationController with default data source");\r
- CdmPersistentDataSource dataSource = CdmPersistentDataSource.NewDefaultInstance();\r
+ CdmPersistentDataSource dataSource = getDefaultDatasource();\r
return CdmApplicationController.NewInstance(null, dataSource, dbSchemaValidation, false);\r
}\r
\r
- \r
+\r
/**\r
- * Constructor, opens an spring 2.5 ApplicationContext by using the according data source and the\r
- * default database schema validation type\r
+ * Constructor, opens an spring ApplicationContext by using the according data source\r
+ * and the default database schema validation type\r
+ *\r
* @param dataSource\r
*/\r
- public static CdmApplicationController NewInstance(ICdmDataSource dataSource) \r
- throws DataSourceNotFoundException, TermNotFoundException{\r
+ public static CdmApplicationController NewInstance(ICdmDataSource dataSource){\r
return CdmApplicationController.NewInstance(null, dataSource, defaultDbSchemaValidation, false);\r
}\r
- \r
- public static CdmApplicationController NewInstance(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation) \r
- throws DataSourceNotFoundException, TermNotFoundException{\r
+\r
+\r
+ public static CdmApplicationController NewInstance(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation){\r
return CdmApplicationController.NewInstance(null, dataSource, dbSchemaValidation, false);\r
}\r
\r
- public static CdmApplicationController NewInstance(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading) \r
- throws DataSourceNotFoundException, TermNotFoundException{\r
+\r
+ public static CdmApplicationController NewInstance(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading){\r
return CdmApplicationController.NewInstance(null, dataSource, dbSchemaValidation, omitTermLoading);\r
}\r
- \r
- public static CdmApplicationController NewInstance(Resource applicationContextResource, ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading) \r
- throws DataSourceNotFoundException, TermNotFoundException{\r
- return CdmApplicationController.NewInstance(applicationContextResource, dataSource, dbSchemaValidation, omitTermLoading, null);\r
+\r
+ public static CdmApplicationController NewInstance(Resource applicationContextResource, ICdmDataSource dataSource,\r
+ DbSchemaValidation dbSchemaValidation, boolean omitTermLoading){\r
+ return CdmApplicationController.NewInstance(applicationContextResource, dataSource, dbSchemaValidation,\r
+ null, omitTermLoading, null);\r
+ }\r
+ public static CdmApplicationController NewInstance(Resource applicationContextResource, ICdmDataSource dataSource,\r
+ DbSchemaValidation dbSchemaValidation, boolean omitTermLoading, IProgressMonitor progressMonitor){\r
+ return new CdmApplicationController(applicationContextResource, dataSource, dbSchemaValidation,\r
+ null, omitTermLoading, progressMonitor, null);\r
+ }\r
+ public static CdmApplicationController NewInstance(Resource applicationContextResource, ICdmDataSource dataSource,\r
+ DbSchemaValidation dbSchemaValidation, HibernateConfiguration hibernateConfig,\r
+ boolean omitTermLoading, IProgressMonitor progressMonitor){\r
+ return new CdmApplicationController(applicationContextResource, dataSource, dbSchemaValidation,\r
+ hibernateConfig, omitTermLoading, progressMonitor, null);\r
+ }\r
+\r
+\r
+ //TODO discuss need for listeners before commit to trunk\r
+ // public static CdmApplicationController NewInstance(Resource applicationContextResource, ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading, IProgressMonitor progressMonitor, List<ApplicationListener> listeners) {\r
+ // return new CdmApplicationController(applicationContextResource, dataSource, dbSchemaValidation, omitTermLoading, progressMonitor,listeners);\r
+ // }\r
+\r
+ /**\r
+ * @return\r
+ */\r
+ protected static ClassPathResource getClasspathResource(){\r
+ return new ClassPathResource(DEFAULT_APPLICATION_CONTEXT_RESOURCE);\r
+ }\r
+\r
+\r
+ /**\r
+ * @return\r
+ * @throws DataSourceNotFoundException\r
+ */\r
+ protected static CdmPersistentDataSource getDefaultDatasource() throws DataSourceNotFoundException{\r
+ CdmPersistentDataSource dataSource = CdmPersistentDataSource.NewDefaultInstance();\r
+ return dataSource;\r
}\r
- \r
- public static CdmApplicationController NewInstance(Resource applicationContextResource, ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading, IProgressMonitor progressMonitor) \r
- throws DataSourceNotFoundException, TermNotFoundException{\r
\r
- \r
- return new CdmApplicationController(applicationContextResource, dataSource, dbSchemaValidation, omitTermLoading, progressMonitor);\r
+\r
+ /**\r
+ *\r
+ * FIXME:Remoting this constructor is added only to allow extension of this cntroller\r
+ * class. and should be removed after refactoring\r
+ */\r
+ protected CdmApplicationController(){\r
+ applicationContextResource = null;\r
+ progressMonitor = null;\r
}\r
\r
+\r
/**\r
- * Constructor, opens an spring 2.5 ApplicationContext by using the according data source\r
+ * Constructor, opens an spring 2.5 ApplicationContext by using the according data\r
+ * source\r
+ *\r
* @param dataSource\r
* @param dbSchemaValidation\r
* @param omitTermLoading\r
*/\r
- private CdmApplicationController(Resource applicationContextResource, ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading, IProgressMonitor progressMonitor){\r
+ protected CdmApplicationController(Resource applicationContextResource, ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation,\r
+ HibernateConfiguration hibernateConfig,\r
+ boolean omitTermLoading, IProgressMonitor progressMonitor, List<ApplicationListener> listeners){\r
logger.info("Start CdmApplicationController with datasource: " + dataSource.getName());\r
- \r
- if (dbSchemaValidation == null){\r
+\r
+ if (dbSchemaValidation == null) {\r
dbSchemaValidation = defaultDbSchemaValidation;\r
}\r
- \r
- this.applicationContextResource = applicationContextResource != null ? applicationContextResource : new ClassPathResource(DEFAULT_APPLICATION_CONTEXT_RESOURCE);\r
+ this.applicationContextResource = applicationContextResource != null ? applicationContextResource : getClasspathResource();\r
this.progressMonitor = progressMonitor != null ? progressMonitor : new NullProgressMonitor();\r
- \r
- setNewDataSource(dataSource, dbSchemaValidation, omitTermLoading);\r
+\r
+ setNewDataSource(dataSource, dbSchemaValidation, hibernateConfig, omitTermLoading, listeners);\r
}\r
- \r
- \r
+\r
+\r
/**\r
- * Sets the application context to a new spring ApplicationContext by using the according data source and initializes the Controller.\r
+ * Sets the application context to a new spring ApplicationContext by using the\r
+ * according data source and initializes the Controller.\r
+ *\r
* @param dataSource\r
*/\r
- private boolean setNewDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading){\r
- if (dbSchemaValidation == null){\r
+ private boolean setNewDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation,\r
+ HibernateConfiguration hibernateConfig,\r
+ boolean omitTermLoading, List<ApplicationListener> listeners){\r
+\r
+ if (dbSchemaValidation == null) {\r
dbSchemaValidation = defaultDbSchemaValidation;\r
}\r
logger.info("Connecting to '" + dataSource.getName() + "'");\r
- progressMonitor.subTask("Connecting to '" + dataSource.getName() + "'");\r
- progressMonitor.worked(1);\r
\r
- GenericApplicationContext appContext;\r
- appContext = new EclipseRcpSaveGenericApplicationContext();\r
- \r
+ MonitoredGenericApplicationContext applicationContext = new MonitoredGenericApplicationContext();\r
+ int refreshTasks = 45;\r
+ int nTasks = 5 + refreshTasks;\r
+ // nTasks += applicationContext.countTasks();\r
+ progressMonitor.beginTask("Connecting to '" + dataSource.getName() + "'", nTasks);\r
+\r
+ // progressMonitor.worked(1);\r
+\r
BeanDefinition datasourceBean = dataSource.getDatasourceBean();\r
datasourceBean.setAttribute("isLazy", false);\r
progressMonitor.subTask("Registering datasource.");\r
+ applicationContext.registerBeanDefinition("dataSource", datasourceBean);\r
progressMonitor.worked(1);\r
- appContext.registerBeanDefinition("dataSource", datasourceBean);\r
- \r
- BeanDefinition hibernatePropBean= dataSource.getHibernatePropertiesBean(dbSchemaValidation);\r
- appContext.registerBeanDefinition("hibernateProperties", hibernatePropBean);\r
- \r
- XmlBeanDefinitionReader xmlReader = new XmlBeanDefinitionReader(appContext);\r
- progressMonitor.subTask("Registering context resources.");\r
+\r
+ BeanDefinition hibernatePropBean = dataSource.getHibernatePropertiesBean(dbSchemaValidation, hibernateConfig);\r
+ applicationContext.registerBeanDefinition("hibernateProperties", hibernatePropBean);\r
+\r
+ XmlBeanDefinitionReader xmlReader = new XmlBeanDefinitionReader(applicationContext);\r
+ progressMonitor.subTask("Registering resources.");\r
+ xmlReader.loadBeanDefinitions(applicationContextResource);\r
progressMonitor.worked(1);\r
- xmlReader.loadBeanDefinitions(this.applicationContextResource); \r
- \r
+\r
//omitTerms\r
- String initializerName = "persistentTermInitializer";\r
- BeanDefinition beanDef = appContext.getBeanDefinition(initializerName);\r
- MutablePropertyValues values = beanDef.getPropertyValues();\r
- values.addPropertyValue("omit", omitTermLoading);\r
- \r
- progressMonitor.subTask("Starting context. This might take a while...");\r
- progressMonitor.worked(1);\r
- appContext.refresh();\r
- appContext.start();\r
- \r
- progressMonitor.subTask("Setting application context.");\r
- progressMonitor.worked(1);\r
- setApplicationContext(appContext);\r
- \r
- //initialize user and metaData for new databases\r
- int userCount = getUserService().count(User.class);\r
- if (userCount == 0 ){\r
- progressMonitor.subTask("Creating Admin User");\r
- progressMonitor.worked(1);\r
- createAdminUser();\r
+ if (omitTermLoading == true) {\r
+ String initializerName = "persistentTermInitializer";\r
+ BeanDefinition beanDef = applicationContext.getBeanDefinition(initializerName);\r
+ MutablePropertyValues values = beanDef.getPropertyValues();\r
+ values.addPropertyValue("omit", omitTermLoading);\r
}\r
- int metaDataCount = getCommonService().getCdmMetaData().size();\r
- if (metaDataCount == 0){\r
- progressMonitor.subTask("Creating Meta Data");\r
- progressMonitor.worked(1);\r
- createMetadata();\r
+\r
+ if (listeners != null) {\r
+ for (ApplicationListener<?> listener : listeners) {\r
+ applicationContext.addApplicationListener(listener);\r
+ }\r
}\r
- \r
+\r
+ // String message = "Start application context. This might take a while ...";\r
+ //// progressMonitor.subTask(message);\r
+ // SubProgressMonitor subMonitor= new SubProgressMonitor(progressMonitor, 10);\r
+ // subMonitor.beginTask(message, 2);\r
+ // applicationContext.setProgressMonitor(subMonitor);\r
+\r
+ applicationContext.refresh(new SubProgressMonitor(progressMonitor, refreshTasks));\r
+ applicationContext.start();\r
+ // progressMonitor.worked(1);\r
+\r
+ progressMonitor.subTask("Cleaning up.");\r
+ setApplicationContext(applicationContext);\r
+ progressMonitor.worked(1);\r
+\r
+ progressMonitor.done();\r
return true;\r
}\r
\r
- private void createAdminUser(){\r
- User firstUser = User.NewInstance("admin", "0000");\r
- getUserService().save(firstUser);\r
- logger.info("Admin user created.");\r
- }\r
- \r
- private void createMetadata(){\r
- List<CdmMetaData> metaData = CdmMetaData.defaultMetaData();\r
- getCommonService().saveAllMetaData(metaData);\r
- logger.info("Metadata created.");\r
- }\r
- \r
- \r
+ /**\r
+ * Overrides all default with values in hibernate config, if defined\r
+ * @param hibernatePropBean\r
+ * @param hibernateConfig\r
+ */\r
+ private void registerHibernateConfig(BeanDefinition hibernatePropBean, HibernateConfiguration hibernateConfig) {\r
+ setHibernateProperty(hibernatePropBean, HibernateConfiguration.REGISTER_ENVERS,\r
+ hibernateConfig.getRegisterEnvers());\r
+ setHibernateProperty(hibernatePropBean, HibernateConfiguration.REGISTER_SEARCH,\r
+ hibernateConfig.getRegisterSearch());\r
+ setHibernateProperty(hibernatePropBean, HibernateConfiguration.SHOW_SQL,\r
+ hibernateConfig.getShowSql());\r
+ setHibernateProperty(hibernatePropBean, HibernateConfiguration.FORMAT_SQL,\r
+ hibernateConfig.getFormatSql());\r
+ }\r
+\r
+\r
+ private void setHibernateProperty(BeanDefinition hibernatePropBean, String key, Boolean value) {\r
+ if (value != null){\r
+ setHibernateProperty(hibernatePropBean, key, String.valueOf(value));\r
+ }\r
+ }\r
+ private void setHibernateProperty(BeanDefinition hibernatePropBean, String key, String value) {\r
+ if (value != null){\r
+ Properties props = (Properties)hibernatePropBean.getPropertyValues().get("properties");\r
+ props.setProperty(key, value);\r
+ }\r
+ }\r
+\r
+\r
/**\r
* Tests if some DefinedTermsAreMissing.\r
+ *\r
* @return true, if at least one is missing, else false\r
*/\r
public boolean testDefinedTermsAreMissing(){\r
UUID englishUuid = UUID.fromString("e9f8cdb7-6819-44e8-95d3-e2d0690c3523");\r
- DefinedTermBase<?> english = this.getTermService().getByUri(englishUuid.toString());\r
- if ( english == null || ! english.getUuid().equals(englishUuid)){\r
+ DefinedTermBase<?> english = this.getTermService().load(englishUuid);\r
+ if (english == null || !english.getUuid().equals(englishUuid)) {\r
return true;\r
- }else{\r
+ }\r
+ else {\r
return false;\r
}\r
}\r
- \r
+\r
\r
/**\r
* Changes the ApplicationContext to the new dataSource\r
+ *\r
* @param dataSource\r
*/\r
public boolean changeDataSource(ICdmDataSource dataSource){\r
//logger.info("Change datasource to : " + dataSource);\r
- return setNewDataSource(dataSource, DbSchemaValidation.VALIDATE, false);\r
+ return setNewDataSource(dataSource, DbSchemaValidation.VALIDATE, null, false, null);\r
}\r
- \r
+\r
+\r
/**\r
* Changes the ApplicationContext to the new dataSource\r
+ *\r
* @param dataSource\r
* @param dbSchemaValidation\r
*/\r
public boolean changeDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation){\r
//logger.info("Change datasource to : " + dataSource);\r
- return setNewDataSource(dataSource, dbSchemaValidation, false);\r
+ return setNewDataSource(dataSource, dbSchemaValidation, null, false, null);\r
}\r
- \r
+\r
+\r
/**\r
* Changes the ApplicationContext to the new dataSource\r
+ *\r
* @param dataSource\r
* @param dbSchemaValidation\r
* @param omitTermLoading\r
*/\r
public boolean changeDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading){\r
logger.info("Change datasource to : " + dataSource);\r
- return setNewDataSource(dataSource, dbSchemaValidation, omitTermLoading);\r
+ return setNewDataSource(dataSource, dbSchemaValidation, null, omitTermLoading, null);\r
+ }\r
+\r
+\r
+ /**\r
+ * Changes the ApplicationContext to the new dataSource\r
+ *\r
+ * @param dataSource\r
+ * @param dbSchemaValidation\r
+ * @param omitTermLoading\r
+ */\r
+ public boolean changeDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading,\r
+ List<ApplicationListener> listeners){\r
+ logger.info("Change datasource to : " + dataSource);\r
+ return setNewDataSource(dataSource, dbSchemaValidation, null, omitTermLoading, listeners);\r
}\r
- \r
+\r
+\r
/**\r
* Sets a new application Context.\r
+ *\r
* @param ac\r
*/\r
public void setApplicationContext(AbstractApplicationContext ac){\r
applicationContext.registerShutdownHook();\r
init();\r
}\r
- \r
- /* (non-Javadoc)\r
- * @see java.lang.Object#finalize()\r
- */\r
+\r
+ @Override\r
public void finalize(){\r
close();\r
}\r
- \r
+\r
/**\r
* closes the application\r
*/\r
public void close(){\r
closeApplicationContext();\r
}\r
- \r
+\r
+\r
/**\r
* closes the application context\r
*/\r
- private void closeApplicationContext(){\r
- if (applicationContext != null){\r
+ protected void closeApplicationContext(){\r
+ if (applicationContext != null) {\r
logger.info("Close ApplicationContext");\r
applicationContext.close();\r
}\r
}\r
- \r
- private void init(){\r
- logger.debug("Init " + this.getClass().getName() + " ... ");\r
- if (logger.isDebugEnabled()){for (String beanName : applicationContext.getBeanDefinitionNames()){ logger.debug(beanName);}}\r
+\r
+\r
+ protected void init(){\r
+ logger.debug("Init " + this.getClass().getName() + " ... ");\r
+ if (logger.isDebugEnabled()) {\r
+ for (String beanName : applicationContext.getBeanDefinitionNames()) {\r
+ logger.debug(beanName);\r
+ }\r
+ }\r
//TODO delete next row (was just for testing)\r
- if (logger.isInfoEnabled()){\r
+ if (logger.isInfoEnabled()) {\r
logger.info("Registered Beans: ");\r
- progressMonitor.subTask("Registered Beans: ");\r
String[] beanNames = applicationContext.getBeanDefinitionNames();\r
- for (String beanName : beanNames){\r
+ for (String beanName : beanNames) {\r
logger.info(beanName);\r
- progressMonitor.subTask(beanName);\r
}\r
}\r
- configuration = (ICdmApplicationConfiguration)applicationContext.getBean("cdmApplicationDefaultConfiguration");\r
- getDatabaseService().setApplicationController(this);\r
+ configuration = (ICdmRepository) applicationContext.getBean("cdmRepository");\r
+ try {\r
+ //FIXME:Remoting catching exection to allow for remoting\r
+ getDatabaseService().setApplicationController(this);\r
+ }\r
+ catch (UnsupportedOperationException uoe) {\r
+ logger.warn("getDatabaseService() is not implmented for current application context");\r
+ }\r
+ }\r
+\r
+\r
+ /* ****** Services ******** */\r
+ @Override\r
+ public final IAnnotationService getAnnotationService(){\r
+ return configuration.getAnnotationService();\r
}\r
- \r
\r
- \r
- /* ****** Services *********/\r
+ @Override\r
public final INameService getNameService(){\r
- return configuration.getNameService();\r
+ return configuration.getNameService();\r
}\r
\r
+\r
+ @Override\r
public final ITaxonService getTaxonService(){\r
return configuration.getTaxonService();\r
}\r
- \r
- public final ITaxonTreeService getTaxonTreeService(){\r
- return configuration.getTaxonTreeService();\r
+\r
+\r
+ @Override\r
+ public final IClassificationService getClassificationService(){\r
+ return configuration.getClassificationService();\r
}\r
- \r
+\r
+\r
+ @Override\r
public final ITaxonNodeService getTaxonNodeService(){\r
- return configuration.getTaxonNodeService();\r
+ try{\r
+ return configuration.getTaxonNodeService();\r
+ } catch (Exception e){\r
+ e.printStackTrace();\r
+ }\r
+ return null;\r
}\r
\r
+\r
+ @Override\r
public final IReferenceService getReferenceService(){\r
return configuration.getReferenceService();\r
}\r
- \r
+\r
+\r
+ @Override\r
public final IAgentService getAgentService(){\r
return configuration.getAgentService();\r
}\r
- \r
+\r
+\r
+ @Override\r
public final IDatabaseService getDatabaseService(){\r
return configuration.getDatabaseService();\r
}\r
- \r
+\r
+\r
+ @Override\r
public final ITermService getTermService(){\r
return configuration.getTermService();\r
}\r
\r
+\r
+ @Override\r
public final IDescriptionService getDescriptionService(){\r
return configuration.getDescriptionService();\r
}\r
- \r
+\r
+\r
+ @Override\r
public final IOccurrenceService getOccurrenceService(){\r
return configuration.getOccurrenceService();\r
}\r
\r
+ @Override\r
+ public IAmplificationService getAmplificationService(){\r
+ return configuration.getAmplificationService();\r
+ }\r
+\r
+ @Override\r
+ public ISequenceService getSequenceService(){\r
+ return configuration.getSequenceService();\r
+ }\r
+\r
+ @Override\r
+ public IEventBaseService getEventBaseService() {\r
+ return configuration.getEventBaseService();\r
+ }\r
+\r
+\r
+\r
+ @Override\r
+ public final IPrimerService getPrimerService(){\r
+ return configuration.getPrimerService();\r
+ }\r
+\r
+\r
+ @Override\r
public final IMediaService getMediaService(){\r
return configuration.getMediaService();\r
}\r
\r
+\r
+ @Override\r
+ public final IMetadataService getMetadataService(){\r
+ return configuration.getMetadataService();\r
+ }\r
+\r
+\r
+ @Override\r
public final ICommonService getCommonService(){\r
return configuration.getCommonService();\r
}\r
- \r
+\r
+\r
+ @Override\r
public final ILocationService getLocationService(){\r
return configuration.getLocationService();\r
}\r
- \r
+\r
+\r
+ @Override\r
public final IUserService getUserService(){\r
return configuration.getUserService();\r
}\r
- \r
+\r
+\r
+ @Override\r
+ public final IGrantedAuthorityService getGrantedAuthorityService(){\r
+ return configuration.getGrantedAuthorityService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public IGroupService getGroupService(){\r
+ return configuration.getGroupService();\r
+ }\r
+\r
+\r
+ @Override\r
public final ICollectionService getCollectionService(){\r
return configuration.getCollectionService();\r
}\r
- \r
+\r
+\r
+ @Override\r
public final IFeatureTreeService getFeatureTreeService(){\r
return configuration.getFeatureTreeService();\r
}\r
- \r
+\r
+ @Override\r
+ public final IPreferenceService getPreferenceService(){\r
+ return configuration.getPreferenceService();\r
+ }\r
+\r
+\r
+ @Override\r
public final IFeatureNodeService getFeatureNodeService(){\r
return configuration.getFeatureNodeService();\r
}\r
- \r
+\r
+\r
+ @Override\r
public final IVocabularyService getVocabularyService(){\r
return configuration.getVocabularyService();\r
- } \r
- \r
- public final IService<CdmBase> getMainService(){\r
- return configuration.getMainService();\r
}\r
- \r
+\r
+\r
+ @Override\r
+ public final IIdentificationKeyService getIdentificationKeyService(){\r
+ return configuration.getIdentificationKeyService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IPolytomousKeyService getPolytomousKeyService(){\r
+ return configuration.getPolytomousKeyService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IPolytomousKeyNodeService getPolytomousKeyNodeService(){\r
+ return configuration.getPolytomousKeyNodeService();\r
+ }\r
+\r
+\r
+ /**\r
+ * {@inheritDoc}\r
+ */\r
+ @Override\r
+ public IProgressMonitorService getProgressMonitorService() {\r
+ return configuration.getProgressMonitorService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public IEntityValidationService getEntityValidationService(){\r
+ return configuration.getEntityValidationService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public IEntityConstraintViolationService getEntityConstraintViolationService(){\r
+ return configuration.getEntityConstraintViolationService();\r
+ }\r
+\r
+ @Override\r
+ public final IDescriptiveDataSetService getDescriptiveDataSetService(){\r
+ return configuration.getDescriptiveDataSetService();\r
+ }\r
+\r
+\r
+ @Override\r
public final ConversationHolder NewConversation(){\r
//return (ConversationHolder)applicationContext.getBean("conversationHolder");\r
return configuration.NewConversation();\r
}\r
- \r
- \r
+\r
+\r
+ /* **** Security ***** */\r
+\r
+ @Override\r
+ public void authenticate(String username, String password){\r
+ UsernamePasswordAuthenticationToken tokenForUser = new UsernamePasswordAuthenticationToken(username, password);\r
+ Authentication authentication = this.getAuthenticationManager().authenticate(tokenForUser);\r
+ SecurityContext context = SecurityContextHolder.getContext();\r
+ context.setAuthentication(authentication);\r
+ }\r
+\r
+ @Override\r
public final ProviderManager getAuthenticationManager(){\r
return configuration.getAuthenticationManager();\r
}\r
- \r
+\r
\r
@Override\r
- public final PlatformTransactionManager getTransactionManager() {\r
+ public ICdmPermissionEvaluator getPermissionEvaluator(){\r
+ return configuration.getPermissionEvaluator();\r
+ }\r
+\r
+ /**\r
+ * @see org.springframework.security.access.PermissionEvaluator#hasPermission(org.springframework.security.core.Authentication,\r
+ * java.lang.Object, java.lang.Object)\r
+ *\r
+ * @param targetDomainObject\r
+ * @param permission\r
+ * @return\r
+ */\r
+ public boolean currentAuthentiationHasPermissions(CdmBase targetDomainObject, EnumSet<CRUD> permission){\r
+ SecurityContext context = SecurityContextHolder.getContext();\r
+ return getPermissionEvaluator().hasPermission(context.getAuthentication(), targetDomainObject, permission);\r
+ }\r
+\r
+\r
+ @Override\r
+ public final PlatformTransactionManager getTransactionManager(){\r
return configuration.getTransactionManager();\r
}\r
- \r
+\r
+\r
+ @Override\r
public final Object getBean(String name){\r
return this.applicationContext.getBean(name);\r
}\r
- \r
+\r
+\r
/*\r
- * OLD TRANSACTION STUFF \r
+ * OLD TRANSACTION STUFF\r
*/\r
- \r
- /* **** flush ***********/\r
- public void flush() {\r
- SessionFactory sf = (SessionFactory)applicationContext.getBean("sessionFactory");\r
+\r
+ /* **** flush ********** */\r
+ public void flush(){\r
+ SessionFactory sf = (SessionFactory) applicationContext.getBean("sessionFactory");\r
sf.getCurrentSession().flush();\r
}\r
- \r
+\r
+\r
public SessionFactory getSessionFactory(){\r
- return (SessionFactory)applicationContext.getBean("sessionFactory");\r
+ return (SessionFactory) applicationContext.getBean("sessionFactory");\r
}\r
- \r
- public TransactionStatus startTransaction() {\r
- \r
+\r
+\r
+ @Override\r
+ public TransactionStatus startTransaction(){\r
return startTransaction(false);\r
}\r
- \r
- public TransactionStatus startTransaction(Boolean readOnly) {\r
- \r
- PlatformTransactionManager txManager = configuration.getTransactionManager();\r
- \r
- DefaultTransactionDefinition defaultTxDef = new DefaultTransactionDefinition();\r
- defaultTxDef.setReadOnly(readOnly);\r
- TransactionDefinition txDef = defaultTxDef;\r
\r
- // Log some transaction-related debug information.\r
- if (logger.isDebugEnabled()) {\r
- logger.debug("Transaction name = " + txDef.getName());\r
- logger.debug("Transaction facets:");\r
- logger.debug("Propagation behavior = " + txDef.getPropagationBehavior());\r
- logger.debug("Isolation level = " + txDef.getIsolationLevel());\r
- logger.debug("Timeout = " + txDef.getTimeout());\r
- logger.debug("Read Only = " + txDef.isReadOnly());\r
- // org.springframework.orm.hibernate3.HibernateTransactionManager\r
- // provides more transaction/session-related debug information.\r
- }\r
- \r
- TransactionStatus txStatus = txManager.getTransaction(txDef);\r
- return txStatus;\r
+\r
+ @Override\r
+ public TransactionStatus startTransaction(Boolean readOnly){\r
+ return configuration.startTransaction(readOnly);\r
}\r
\r
+ @Override\r
public void commitTransaction(TransactionStatus txStatus){\r
PlatformTransactionManager txManager = configuration.getTransactionManager();\r
txManager.commit(txStatus);\r
return;\r
}\r
\r
+\r
+ /**\r
+ * {@inheritDoc}\r
+ */\r
+ @Override\r
+ public IRightsService getRightsService() {\r
+ return configuration.getRightsService();\r
+ }\r
+\r
+\r
+ /**\r
+ * {@inheritDoc}\r
+ */\r
+ @Override\r
+ public IRegistrationService getRegistrationService() {\r
+ return configuration.getRegistrationService();\r
+ }\r
+\r
}\r
+\r
BGBM BDI Projects / cdmlib.git / blobdiff