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Assigned continents to ISO 3166 countries using TDWG scheme
[cdmlib.git] / .gitattributes
diff --git a/.gitattributes b/.gitattributes
index 4218484e2c036c3c68e372e72bbddce13566fa70..d416bef549b9f135c7b4bacf28155600d857aa8e 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -3,6 +3,7 @@
 /LICENSE.TXT -text
 app-import/pom.xml -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/abcdImport/ABCD206Activator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/abcdImport/SynthesysCacheActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/BerlinModelImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/BerlinModelSources.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/CichorieaeActivator.java -text
@@ -12,6 +13,8 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/EuroMedActivator
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/SalvadorActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/TreeCreator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/common/CdmDestinations.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/jaxb/CdmDiffActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/jaxb/CdmExportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/tcs/PalmaeActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/tcs/PalmaeTaxonXImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/tcs/TcsSources.java -text
@@ -20,13 +23,6 @@ app-import/src/main/resources/Asteraceae[!!-~]Specimen[!!-~]Images[!!-~]Vienna.x
 app-import/src/main/resources/AsteraceaeSpecimenImagesVienna.mdb -text
 app-import/src/main/resources/arecaceae.rdf -text
 app-import/src/main/resources/log4j.properties -text
-app-import/src/main/resources/taxonX/Utf8/Kopie[!!-~]von[!!-~]palm_tn_222905.xml -text
-app-import/src/main/resources/taxonX/Utf8/Kopie[!!-~]von[!!-~]palm_tn_222911.xml -text
-app-import/src/main/resources/taxonX/Utf8/palm_tn_222905.xml -text
-app-import/src/main/resources/taxonX/Utf8/palm_tn_222911.xml -text
-app-import/src/main/resources/taxonX/_alt/Beccariophoenix_madagascariensis.xml -text
-app-import/src/main/resources/taxonX/_alt/Bismarckia_nobilis.xml -text
-app-import/src/main/resources/taxonX/_alt/Dypsis_basilonga.xml -text
 app-import/src/main/resources/taxonX/palm_tn_29336.xml -text
 app-import/src/main/resources/taxonX/palm_tn_29339.xml -text
 app-import/src/main/resources/taxonX/palm_tn_29350.xml -text
@@ -54,35 +50,6 @@ app-import/src/main/resources/taxonX/palm_tn_29429.xml -text
 app-import/src/main/resources/taxonX/palm_tn_29430.xml -text
 app-import/src/main/resources/taxonX/palm_tn_29684.xml -text
 app-import/src/main/resources/taxonX/palm_tn_29864.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed.zip -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29333.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29336.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29339.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29350.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29352.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29356.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29361.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29366.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29367.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29371.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29372.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29375.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29385.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29394.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29401.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29404.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29410.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29419.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29422.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29423.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29424.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29425.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29427.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29428.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29429.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29430.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29684.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29864.xml -text
 cdmlib-commons/LICENSE.TXT -text
 cdmlib-commons/README.TXT -text
 cdmlib-commons/pom.xml -text
@@ -129,7 +96,14 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/ImportHelper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/MapWrapper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/Source.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/SourceConnectionException.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/JaxbExportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/CdmDocumentBuilder.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/CdmExporter.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/CdmMarshallerListener.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/CdmResourceResolver.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/CdmSchemaGenerator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/DataSet.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/JaxbExportImportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/LsInputImpl.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/TaxonXDescriptionIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/TaxonXImportConfigurator.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/TaxonXTransformer.java -text
@@ -144,21 +118,22 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcs/TcsTaxonNameIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcs/TcsTaxonNameRelationsIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcs/TcsTaxonRelationsIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcs/TcsTransformer.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/unitsPortal/SpecimenImportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/unitsPortal/SpecimenIoBase.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/unitsPortal/TestABCD.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/unitsPortal/UnitsGatheringArea.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/unitsPortal/UnitsGatheringEvent.java -text
 cdmlib-io/src/main/resources/log4j.properties -text
 cdmlib-io/src/site/site.xml -text
+cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/test/function/TestDatabase.java -text
+cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/test/function/TestTransaction.java -text
 cdmlib-io/src/test/java/eu/etaxonomy/cdm/test/integration/TestCdmDbComparator.java -text
 cdmlib-model/LICENSE.TXT -text
 cdmlib-model/README.TXT -text
 cdmlib-model/pom.xml -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/aspectj/PropertyChangeAspect.aj -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/datagenerator/TaxonGenerator.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/CdmDocumentBuilder.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/CdmMarshallerListener.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/CdmResourceResolver.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/CdmSchemaGenerator.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/DataSet.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/DateTimeAdapter.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/LsInputImpl.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/MultilanguageTextAdapter.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/UUIDAdapter.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Address.java -text
@@ -376,6 +351,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/exceptions/UnknownCdmTypeEx
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/INonViralNameParser.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/NonViralNameParserImpl.java -text
 cdmlib-model/src/main/resources/log4j.properties -text
+cdmlib-model/src/main/resources/terms/AbsenceTerm.csv -text
 cdmlib-model/src/main/resources/terms/Continent.csv -text
 cdmlib-model/src/main/resources/terms/DerivationEventType.csv -text
 cdmlib-model/src/main/resources/terms/Feature.csv -text
@@ -387,6 +363,7 @@ cdmlib-model/src/main/resources/terms/NamedAreaLevel.csv -text
 cdmlib-model/src/main/resources/terms/NamedAreaType.csv -text
 cdmlib-model/src/main/resources/terms/NomenclaturalCode.csv -text
 cdmlib-model/src/main/resources/terms/NomenclaturalStatusType.csv -text
+cdmlib-model/src/main/resources/terms/PresenceTerm.csv -text
 cdmlib-model/src/main/resources/terms/README.TXT -text
 cdmlib-model/src/main/resources/terms/Rank.csv -text
 cdmlib-model/src/main/resources/terms/SynonymRelationshipType.csv -text
@@ -416,9 +393,6 @@ cdmlib-model/src/site/resources/images/uml/Types_section.png -text
 cdmlib-model/src/site/resources/images/uml/package_overview.png -text
 cdmlib-model/src/site/site.xml -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/aspectj/PropertyChangeTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/jaxb/CdmDocumentBuilderTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/jaxb/CdmSchemaGeneratorTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/DataSetTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/DatabaseInitialiser.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/agent/InstitutionalMembershipTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/AnnotationTest.java -text
@@ -431,7 +405,10 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/OrderedTermVocabularyTe
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/TermVocabularyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/init/DefaultVocabularyStoreTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/init/TermLoaderTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/DistributionTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTermBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/TextDataTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/location/TdwgAreaTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/BotanicalNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/NonViralNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/RankTest.java -text
@@ -444,6 +421,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/ZoologicalNameCa
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/NonViralNameParserImplTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestModel.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestSpecimen.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestUUID.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestBookDefaultCacheStrategies.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestNameCacheStrategies.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestTaxonNameParserBotanicalNameImpl.java -text
@@ -569,6 +547,7 @@ cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedPat
 cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedPathMatcher.java -text
 cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedPathMatcherException.java -text
 cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedUrlHandlerMapping.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/AnnotationElementSTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/AnnotationSTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/AnnotationTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/AssociationFeatureSTO.java -text
@@ -685,7 +664,6 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceImplTest.
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TermServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/Datasource.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestDatabase.java -text
-cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestJaxb.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestService.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestTaxonFunction.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/integration/CreateDataTest.java -text
@@ -786,9 +764,7 @@ eclipse-plugin/src/test/java/eu/etaxonomy/cdm/aspectj/PropertyChangeTest.java -t
 eclipse-plugin/xercesImpl.jar -text
 eclipse-plugin/xml-apis.jar -text
 eclipse-updateSite/.project -text
-eclipse-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.7.6.jar -text
 eclipse-updateSite/index.html -text
-eclipse-updateSite/plugins/eu.etaxonomy.cdmLibrary_0.4.7.6.jar -text
 eclipse-updateSite/site.xml -text
 libraryTesterApplication/.classpath -text
 libraryTesterApplication/.project -text