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[cdmlib.git] / cdmlib-model / src / main / java / eu / etaxonomy / cdm / model / name / BotanicalName.java

diff --git a/cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/BotanicalName.java b/cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/BotanicalName.java
index 9444e4a847a162ca7792334750d3ddacb01f357c..1fde127a101398361c5fe9baf347e3891b8ab373 100644 (file)
--- a/cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/BotanicalName.java
+++ b/cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/BotanicalName.java
@@ -10,39 +10,74 @@
 package eu.etaxonomy.cdm.model.name;
 
 
+import java.util.HashSet;
+import java.util.Set;
+
+import javax.persistence.Entity;
+import javax.persistence.OneToMany;
+import javax.persistence.Transient;
+import javax.xml.bind.annotation.XmlAccessType;
+import javax.xml.bind.annotation.XmlAccessorType;
+import javax.xml.bind.annotation.XmlElement;
+import javax.xml.bind.annotation.XmlElementWrapper;
+import javax.xml.bind.annotation.XmlRootElement;
+import javax.xml.bind.annotation.XmlType;
+
 import org.apache.log4j.Logger;
 import org.hibernate.annotations.Cascade;
 import org.hibernate.annotations.CascadeType;
 
 import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
+import eu.etaxonomy.cdm.model.common.RelationshipBase;
 import eu.etaxonomy.cdm.model.reference.INomenclaturalReference;
-import eu.etaxonomy.cdm.strategy.cache.BotanicNameDefaultCacheStrategy;
-import eu.etaxonomy.cdm.strategy.parser.ITaxonNameParser;
+import eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy;
+import eu.etaxonomy.cdm.strategy.parser.INonViralNameParser;
 import eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl;
 
-import java.util.*;
-import javax.persistence.*;
-
 /**
  * Taxon name class for plants
  * @author m.doering
  * @version 1.0
  * @created 08-Nov-2007 13:06:15
  */
+@XmlAccessorType(XmlAccessType.FIELD)
+@XmlType(name = "", propOrder = {
+    "isHybridFormula",
+    "isMonomHybrid",
+    "isBinomHybrid",
+    "isTrinomHybrid",
+    "isAnamorphic",
+    "hybridRelationships"
+})
+@XmlRootElement(name = "BotanicalName")
 @Entity
 public class BotanicalName extends NonViralName {
+       
        private static final Logger logger = Logger.getLogger(BotanicalName.class);
+       
        //if set: this name is a hybrid formula (a hybrid that does not have an own name) and no other hybrid flags may be set. A
        //hybrid name  may not have either an authorteam nor other name components.
+    @XmlElement(name ="IsHybridFormula")
        private boolean isHybridFormula = false;
+       
+    @XmlElement(name ="IsMonomHybrid")
        private boolean isMonomHybrid = false;
+       
+    @XmlElement(name ="IsBinomHybrid")
        private boolean isBinomHybrid = false;
+       
+    @XmlElement(name ="IsTrinomHybrid")
        private boolean isTrinomHybrid = false;
+       
        //Only for fungi: to indicate that the type of the name is asexual or not
+    @XmlElement(name ="IsAnamorphic")
        private boolean isAnamorphic;
+       
+    @XmlElementWrapper(name = "HybridRelationships")
+    @XmlElement(name = "HybridRelationship")
        private Set<HybridRelationship> hybridRelationships = new HashSet();
 
-       static private ITaxonNameParser nameParser = new NonViralNameParserImpl();
+       static private INonViralNameParser nameParser = new NonViralNameParserImpl();
        
        
        /**
@@ -63,8 +98,8 @@ public class BotanicalName extends NonViralName {
                return new BotanicalName(rank, homotypicalGroup);
        }
        
-       public static  BotanicalName NewInstance(Rank rank, String genusOrUninomial, String specificEpithet, String infraSpecificEpithet, TeamOrPersonBase combinationAuthorTeam, INomenclaturalReference nomenclaturalReference, String nomenclMicroRef, HomotypicalGroup homotypicalGroup) {
-               return new BotanicalName(rank, genusOrUninomial, specificEpithet, infraSpecificEpithet, combinationAuthorTeam, nomenclaturalReference, nomenclMicroRef, homotypicalGroup);
+       public static  BotanicalName NewInstance(Rank rank, String genusOrUninomial, String infraGenericEpithet, String specificEpithet, String infraSpecificEpithet, TeamOrPersonBase combinationAuthorTeam, INomenclaturalReference nomenclaturalReference, String nomenclMicroRef, HomotypicalGroup homotypicalGroup) {
+               return new BotanicalName(rank, genusOrUninomial, infraGenericEpithet, specificEpithet, infraSpecificEpithet, combinationAuthorTeam, nomenclaturalReference, nomenclMicroRef, homotypicalGroup);
        }
        
        /**
@@ -118,8 +153,8 @@ public class BotanicalName extends NonViralName {
                super(rank, homotypicalGroup);
                this.cacheStrategy = BotanicNameDefaultCacheStrategy.NewInstance();
        }
-       protected BotanicalName(Rank rank, String genusOrUninomial, String specificEpithet, String infraSpecificEpithet, TeamOrPersonBase combinationAuthorTeam, INomenclaturalReference nomenclaturalReference, String nomenclMicroRef, HomotypicalGroup homotypicalGroup) {
-               super(rank, genusOrUninomial, specificEpithet, infraSpecificEpithet, combinationAuthorTeam, nomenclaturalReference, nomenclMicroRef, homotypicalGroup);
+       protected BotanicalName(Rank rank, String genusOrUninomial, String infraGenericEpithet, String specificEpithet, String infraSpecificEpithet, TeamOrPersonBase combinationAuthorTeam, INomenclaturalReference nomenclaturalReference, String nomenclMicroRef, HomotypicalGroup homotypicalGroup) {
+               super(rank, genusOrUninomial, infraGenericEpithet, specificEpithet, infraSpecificEpithet, combinationAuthorTeam, nomenclaturalReference, nomenclMicroRef, homotypicalGroup);
                this.cacheStrategy = BotanicNameDefaultCacheStrategy.NewInstance();
        }
 
@@ -150,7 +185,13 @@ public class BotanicalName extends NonViralName {
                return hybridRelationships;
        }
 
-
+       public void addRelationship(RelationshipBase relation) {
+               if (relation instanceof HybridRelationship){
+                       addHybridRelationship((HybridRelationship)relation);
+               }else {
+                       super.addRelationship(relation);
+               }
+       }
 
        public boolean isHybridFormula(){
                return this.isHybridFormula;
@@ -213,8 +254,9 @@ public class BotanicalName extends NonViralName {
        }
        
        
+       @Transient
        @Override
-       public NomenclaturalCode getNomeclaturalCode(){
+       public NomenclaturalCode getNomenclaturalCode(){
                return NomenclaturalCode.ICBN();
 
        }