cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/SpecimenImportStateBase.java

   1 /**
   2 * Copyright (C) 2016 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9 package eu.etaxonomy.cdm.io.specimen;
  10
  11 import java.util.ArrayList;
  12 import java.util.HashMap;
  13 import java.util.List;
  14
  15 import org.springframework.transaction.TransactionStatus;
  16
  17 import eu.etaxonomy.cdm.api.application.ICdmRepository;
  18 import eu.etaxonomy.cdm.io.common.CdmImportBase;
  19 import eu.etaxonomy.cdm.io.common.ImportStateBase;
  20 import eu.etaxonomy.cdm.io.common.MapWrapper;
  21 import eu.etaxonomy.cdm.io.specimen.abcd206.in.SpecimenImportReport;
  22 import eu.etaxonomy.cdm.model.agent.Institution;
  23 import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
  24 import eu.etaxonomy.cdm.model.common.OriginalSourceBase;
  25 import eu.etaxonomy.cdm.model.description.TaxonDescription;
  26 import eu.etaxonomy.cdm.model.occurrence.Collection;
  27 import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
  28 import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
  29 import eu.etaxonomy.cdm.model.reference.Reference;
  30 import eu.etaxonomy.cdm.model.taxon.Classification;
  31
  32 /**
  33  * @author k.luther
  34  * @param <CONFIG>
  35  * @date 15.07.2016
  36  *
  37  */
  38 public class SpecimenImportStateBase<CONFIG extends SpecimenImportConfiguratorBase, STATE extends SpecimenImportStateBase>
  39         extends ImportStateBase<CONFIG , CdmImportBase<CONFIG , STATE >>{
  40
  41
  42     /**
  43      * @param config
  44      */
  45     public SpecimenImportStateBase(CONFIG config) {
  46         super(config);
  47     }
  48
  49     private TransactionStatus tx;
  50
  51     private ICdmRepository cdmRepository;
  52     private Classification classification = null;
  53     private Classification defaultClassification = null;
  54     private Reference ref = null;
  55
  56     private TaxonDescription descriptionGroup = null;
  57     private DerivedUnit derivedUnitBase;
  58
  59     private SpecimenImportReport report;
  60
  61     protected SpecimenDataHolder dataHolder;
  62
  63     private List<OriginalSourceBase<?>> associationRefs = new ArrayList<OriginalSourceBase<?>>();
  64     private boolean associationSourcesSet=false;
  65     private List<OriginalSourceBase<?>> descriptionRefs = new ArrayList<OriginalSourceBase<?>>();
  66     private boolean descriptionSourcesSet=false;
  67     private List<OriginalSourceBase<?>> derivedUnitSources = new ArrayList<OriginalSourceBase<?>>();
  68     private boolean derivedUnitSourcesSet=false;
  69     private boolean descriptionGroupSet = false;
  70     protected HashMap<String, Institution> institutions = new HashMap<String, Institution>();
  71     protected HashMap<String, Collection> collections= new HashMap<String, Collection>();
  72     private HashMap<String,FieldUnit> fieldUnits = new HashMap<String, FieldUnit>();
  73
  74     MapWrapper<TeamOrPersonBase<?>> personStore;
  75
  76
  77     /* -----Getter/Setter ---*/
  78
  79     /**
  80      * @return the personStore
  81      */
  82     public MapWrapper<TeamOrPersonBase<?>> getPersonStore() {
  83         return personStore;
  84     }
  85
  86     /**
  87      * @param personStore the personStore to set
  88      */
  89     public void setPersonStore(MapWrapper<TeamOrPersonBase<?>> personStore) {
  90         this.personStore = personStore;
  91     }
  92
  93     /**
  94      * @return the fieldUnits
  95      */
  96     public FieldUnit getFieldUnit(String fieldNumber) {
  97         return fieldUnits.get(fieldNumber);
  98     }
  99
 100     /**
 101      * @param fieldUnits the fieldUnits to set
 102      */
 103     public void setFieldUnit(FieldUnit fieldUnit) {
 104         this.fieldUnits.put(fieldUnit.getFieldNumber(), fieldUnit);
 105     }
 106
 107     @Override
 108     public CONFIG getConfig(){
 109         return super.getConfig();
 110     }
 111
 112     public List<OriginalSourceBase<?>> getAssociationRefs() {
 113         return associationRefs;
 114     }
 115
 116     public void setAssociationRefs(List<OriginalSourceBase<?>> associationRefs) {
 117         this.associationRefs = associationRefs;
 118     }
 119
 120     public boolean isAssociationSourcesSet() {
 121         return associationSourcesSet;
 122     }
 123
 124     public void setAssociationSourcesSet(boolean associationSourcesSet) {
 125         this.associationSourcesSet = associationSourcesSet;
 126     }
 127
 128     public List<OriginalSourceBase<?>> getDescriptionRefs() {
 129         return descriptionRefs;
 130     }
 131
 132     public void setDescriptionRefs(List<OriginalSourceBase<?>> descriptionRefs) {
 133         this.descriptionRefs = descriptionRefs;
 134     }
 135
 136     public boolean isDescriptionSourcesSet() {
 137         return descriptionSourcesSet;
 138     }
 139
 140     public void setDescriptionSourcesSet(boolean descriptionSourcesSet) {
 141         this.descriptionSourcesSet = descriptionSourcesSet;
 142     }
 143
 144     public List<OriginalSourceBase<?>> getDerivedUnitSources() {
 145         return derivedUnitSources;
 146     }
 147
 148     public void setDerivedUnitSources(List<OriginalSourceBase<?>> derivedUnitSources) {
 149         this.derivedUnitSources = derivedUnitSources;
 150     }
 151
 152     public boolean isDerivedUnitSourcesSet() {
 153         return derivedUnitSourcesSet;
 154     }
 155
 156     public void setDerivedUnitSourcesSet(boolean derivedUnitSourcesSet) {
 157         this.derivedUnitSourcesSet = derivedUnitSourcesSet;
 158     }
 159
 160     public boolean isDescriptionGroupSet() {
 161         return descriptionGroupSet;
 162     }
 163
 164     public void setDescriptionGroupSet(boolean descriptionGroupSet) {
 165         this.descriptionGroupSet = descriptionGroupSet;
 166     }
 167
 168     public TransactionStatus getTx() {
 169         return tx;
 170     }
 171
 172     public void setTx(TransactionStatus tx) {
 173         this.tx = tx;
 174     }
 175
 176     public ICdmRepository getCdmRepository() {
 177         return cdmRepository;
 178     }
 179
 180     public void setCdmRepository(ICdmRepository cdmRepository) {
 181         this.cdmRepository = cdmRepository;
 182     }
 183
 184     public Classification getClassification() {
 185         return classification;
 186     }
 187
 188     public void setClassification(Classification classification) {
 189         this.classification = classification;
 190     }
 191
 192     public Classification getDefaultClassification() {
 193         if(defaultClassification==null){
 194             final String defaultClassificationAbcd = "Default Classification Specimen Import";
 195             for (Classification classif : cdmRepository.getClassificationService().list(Classification.class, null, null, null, null)){
 196                 if (classif.getTitleCache()!=null && classif.getTitleCache().equalsIgnoreCase(defaultClassificationAbcd)
 197                         && classif.getCitation()!=null && classif.getCitation().equals(getRef())) {
 198                     defaultClassification = classif;
 199                     break;
 200                 }
 201             }
 202             if(defaultClassification==null){
 203                 defaultClassification = Classification.NewInstance(defaultClassificationAbcd);
 204                 cdmRepository.getClassificationService().save(defaultClassification);
 205             }
 206         }
 207         return defaultClassification;
 208     }
 209
 210     public void setDefaultClassification(Classification defaultClassification) {
 211         this.defaultClassification = defaultClassification;
 212     }
 213
 214     public Reference getRef() {
 215         return ref;
 216     }
 217
 218     public void setRef(Reference ref) {
 219         this.ref = ref;
 220     }
 221
 222     public TaxonDescription getDescriptionGroup() {
 223         return descriptionGroup;
 224     }
 225
 226     public void setDescriptionGroup(TaxonDescription descriptionGroup) {
 227         this.descriptionGroup = descriptionGroup;
 228     }
 229
 230     public DerivedUnit getDerivedUnitBase() {
 231         return derivedUnitBase;
 232     }
 233
 234     public void setDerivedUnitBase(DerivedUnit derivedUnitBase) {
 235         this.derivedUnitBase = derivedUnitBase;
 236     }
 237
 238     /**
 239      * @return the report
 240      */
 241     public SpecimenImportReport getReport() {
 242         if (report == null){
 243             report = new SpecimenImportReport();
 244         }
 245         return report;
 246     }
 247
 248     /**
 249      * @param report the report to set
 250      */
 251     public void setReport(SpecimenImportReport report) {
 252         this.report = report;
 253     }
 254
 255
 256     /**
 257      * @return the dataHolder
 258      */
 259     public SpecimenDataHolder getDataHolder() {
 260         return dataHolder;
 261     }
 262
 263     /**
 264      * @param dataHolder the dataHolder to set
 265      */
 266     public void setDataHolder(SpecimenDataHolder dataHolder) {
 267         this.dataHolder = dataHolder;
 268     }
 269     public void reset() {
 270         getDataHolder().reset();
 271        // setDerivedUnitBase(null);
 272     }
 273
 274 }