cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/descriptive/owl/in/CharacterOwlImport.java

   1 /**
   2 * Copyright (C) 2019 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9 package eu.etaxonomy.cdm.io.descriptive.owl.in;
  10
  11 import java.util.Arrays;
  12
  13 import org.apache.logging.log4j.LogManager;
  14 import org.apache.logging.log4j.Logger;
  15 import org.springframework.stereotype.Component;
  16
  17 import com.hp.hpl.jena.rdf.model.ResIterator;
  18 import com.hp.hpl.jena.rdf.model.Resource;
  19
  20 import eu.etaxonomy.cdm.common.URI;
  21 import eu.etaxonomy.cdm.io.common.CdmImportBase;
  22 import eu.etaxonomy.cdm.io.descriptive.owl.OwlUtil;
  23 import eu.etaxonomy.cdm.model.description.Character;
  24
  25 /**
  26  * @author pplitzner
  27  * @since Aug 28, 2019
  28  */
  29 @Component("characterOwlImport")
  30 public class CharacterOwlImport
  31         extends CdmImportBase<StructureTreeOwlImportConfigurator, StructureTreeOwlImportState> {
  32
  33     private static final long serialVersionUID = -3659780404413458511L;
  34
  35     private final static Logger logger = LogManager.getLogger();
  36
  37     @Override
  38     protected boolean doCheck(StructureTreeOwlImportState state) {
  39         logger.warn("Checking not yet implemented for " + this.getClass().getSimpleName());
  40         return true;
  41     }
  42
  43     @Override
  44     public void doInvoke(StructureTreeOwlImportState state) {
  45         URI source = state.getConfig().getSource();
  46         state.getModel().read(source.toString());
  47         ResIterator iterator = state.getModel().listResourcesWithProperty(OwlUtil.propIsA, OwlUtil.CHARACTER);
  48         while(iterator.hasNext()){
  49             Resource characterResource = iterator.next();
  50             Character character = OwlImportUtil.findTerm(Character.class, characterResource, this, state.getModel(), state);
  51             character = (Character) getTermService().load(character.getUuid(), Arrays.asList(new String[] {
  52                     "structure",
  53                     "structure.term",
  54                     "property",
  55                     "property.term",
  56                     "structureModifier",
  57                     "propertyModifier",
  58                     "recommendedModifierEnumeration",
  59                     "recommendedStatisticalMeasures",
  60                     "recommendedMeasurementUnits",
  61                     "supportedCategoricalEnumerations",
  62                     }));
  63             OwlImportUtil.addCharacterProperties(character, characterResource, this, state.getModel(), state);
  64             getTermService().saveOrUpdate(character);
  65         }
  66     }
  67
  68     @Override
  69     protected boolean isIgnore(StructureTreeOwlImportState state) {
  70         return false;
  71     }
  72
  73 }