app-import/src/main/java/eu/etaxonomy/cdm/app/wp6/palmae/PalmaeActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.wp6.palmae;
  11
  12 import java.io.File;
  13 import java.util.UUID;
  14
  15 import org.apache.log4j.Logger;
  16
  17 import eu.etaxonomy.cdm.api.application.CdmApplicationController;
  18 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  19 import eu.etaxonomy.cdm.app.images.ImageImportConfigurator;
  20 import eu.etaxonomy.cdm.app.tcs.TcsSources;
  21 import eu.etaxonomy.cdm.app.wp6.palmae.config.PalmaeProtologueImportConfigurator;
  22 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  23 import eu.etaxonomy.cdm.database.ICdmDataSource;
  24 import eu.etaxonomy.cdm.io.PalmaeImageImport;
  25 import eu.etaxonomy.cdm.io.PalmaeProtologueImport;
  26 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  27 import eu.etaxonomy.cdm.io.common.IImportConfigurator;
  28 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  29 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  30 import eu.etaxonomy.cdm.io.tcsrdf.TcsRdfImportConfigurator;
  31 import eu.etaxonomy.cdm.model.description.Feature;
  32 import eu.etaxonomy.cdm.model.description.FeatureNode;
  33 import eu.etaxonomy.cdm.model.description.FeatureTree;
  34
  35 /**
  36  * @author a.mueller
  37  * @created 20.06.2008
  38  * @version 1.0
  39  */
  40 public class PalmaeActivator {
  41         private static final Logger logger = Logger.getLogger(PalmaeActivator.class);
  42
  43         //database validation status (create, update, validate ...)
  44         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  45         static final String tcsSource = TcsSources.arecaceae_local();
  46         static final ICdmDataSource cdmDestination = CdmDestinations.localH2Palmae();
  47
  48         static final UUID featureTreeUuid = UUID.fromString("72ccce05-7cc8-4dab-8e47-bf3f5fd848a0");
  49
  50         static final UUID treeUuid = UUID.fromString("1adb71d4-cce6-45e1-b578-e668778d9ec6");
  51         static final UUID secUuid = UUID.fromString("5f32b8af-0c97-48ac-8d33-6099ed68c625");
  52         static final String sourceSecId = "palm_pub_ed_999999";
  53         static final boolean pubishReferencesInBibliography = false;
  54
  55         //should the other imports run as well?
  56         static final boolean includeTaxonX = true;
  57         static final boolean includeImages = true;
  58         static final boolean includeExcelProtologue = true;
  59         static final boolean includeMediaProtologue = true;
  60
  61         //check - import
  62         static final CHECK check = CHECK.CHECK_AND_IMPORT;
  63
  64         static boolean useTaxonomicTree = true;
  65
  66         //authors
  67         static final boolean doAuthors = true;
  68         //references
  69         static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  70         //names
  71         static final boolean doTaxonNames = true;
  72         static final boolean doRelNames = true;
  73
  74         //taxa
  75         static final boolean doTaxa = true;
  76         static final boolean doRelTaxa = true;
  77         static final boolean doFacts = true;
  78
  79
  80         private boolean doImport(){
  81                 boolean success = true;
  82                 System.out.println("Start import from Tcs("+ tcsSource.toString() + ") ...");
  83
  84                 //make BerlinModel Source
  85                 String source = tcsSource;
  86                 ICdmDataSource destination = cdmDestination;
  87
  88                 TcsRdfImportConfigurator tcsImportConfigurator = TcsRdfImportConfigurator.NewInstance(source,  destination);
  89
  90                 tcsImportConfigurator.setTreeUuid(treeUuid);
  91                 tcsImportConfigurator.setSecUuid(secUuid);
  92                 tcsImportConfigurator.setSourceSecId(sourceSecId);
  93
  94                 tcsImportConfigurator.setDoAuthors(doAuthors);
  95                 tcsImportConfigurator.setDoReferences(doReferences);
  96                 tcsImportConfigurator.setDoTaxonNames(doTaxonNames);
  97                 tcsImportConfigurator.setDoRelNames(doRelNames);
  98
  99                 tcsImportConfigurator.setDoTaxa(doTaxa);
 100                 tcsImportConfigurator.setDoRelTaxa(doRelTaxa);
 101                 tcsImportConfigurator.setDoFacts(doFacts);
 102                 tcsImportConfigurator.setUseTaxonomicTree(useTaxonomicTree);
 103                 tcsImportConfigurator.setPublishReferences(pubishReferencesInBibliography);
 104
 105                 tcsImportConfigurator.setCheck(check);
 106                 tcsImportConfigurator.setDbSchemaValidation(hbm2dll);
 107
 108                 // invoke import
 109                 CdmDefaultImport<TcsRdfImportConfigurator> tcsImport = new CdmDefaultImport<TcsRdfImportConfigurator>();
 110                 //new Test().invoke(tcsImportConfigurator);
 111                 success &= tcsImport.invoke(tcsImportConfigurator);
 112
 113                 //make feature tree
 114                 logger.info("Make feature tree");
 115                 CdmApplicationController app = tcsImport.getCdmAppController();
 116
 117                 FeatureTree tree = getFeatureTree();
 118                 app.getDescriptionService().saveFeatureTree(tree);
 119                 System.out.println("End import from TCS ("+ source.toString() + ")...");
 120
 121                 return success;
 122         }
 123
 124
 125         private FeatureTree getFeatureTree(){
 126
 127                 FeatureTree result = FeatureTree.NewInstance(featureTreeUuid);
 128                 FeatureNode root = result.getRoot();
 129
 130                 FeatureNode newNode;
 131                 newNode = FeatureNode.NewInstance(Feature.INTRODUCTION());
 132                 root.addChild(newNode);
 133                 newNode = FeatureNode.NewInstance(Feature.DISTRIBUTION());
 134                 root.addChild(newNode);
 135                 newNode = FeatureNode.NewInstance(Feature.BIOLOGY_ECOLOGY());
 136                 root.addChild(newNode);
 137                 newNode = FeatureNode.NewInstance(Feature.CONSERVATION());
 138                 root.addChild(newNode);
 139                 newNode = FeatureNode.NewInstance(Feature.COMMON_NAME());
 140                 root.addChild(newNode);
 141                 newNode = FeatureNode.NewInstance(Feature.ETYMOLOGY());
 142                 root.addChild(newNode);
 143                 newNode = FeatureNode.NewInstance(Feature.USES());
 144                 root.addChild(newNode);
 145                 newNode = FeatureNode.NewInstance(Feature.CULTIVATION());
 146                 root.addChild(newNode);
 147                 // "anatomy", "fossil record" "relationships"
 148                 //for future
 149                 newNode = FeatureNode.NewInstance(Feature.DISCUSSION());
 150                 root.addChild(newNode);
 151                 newNode = FeatureNode.NewInstance(Feature.DIAGNOSIS());
 152                 root.addChild(newNode);
 153                 newNode = FeatureNode.NewInstance(Feature.DESCRIPTION());
 154                 root.addChild(newNode);
 155                 newNode = FeatureNode.NewInstance(Feature.MATERIALS_EXAMINED());
 156                 root.addChild(newNode);
 157
 158                 return result;
 159
 160
 161         }
 162
 163         /**
 164          * @param args
 165          */
 166         public static void main(String[] args) {
 167                 boolean success = true;
 168
 169                 logger.debug("start");
 170                 PalmaeActivator me = new PalmaeActivator();
 171                 me.doImport();
 172
 173                 if (includeImages){
 174                         System.out.println("Start importing images ...");
 175                         CdmDefaultImport<IImportConfigurator> imageImporter = new CdmDefaultImport<IImportConfigurator>();
 176                         ImageImportConfigurator imageConfigurator = ImageImportConfigurator.NewInstance(
 177                                         PalmaeImageActivator.sourceFolder, cdmDestination, PalmaeImageImport.class);
 178                         imageConfigurator.setSecUuid(secUuid);
 179                         success &= imageImporter.invoke(imageConfigurator);
 180                         System.out.println("End importing images ...");
 181                 }
 182
 183                 if (includeExcelProtologue){
 184                         System.out.println("Start importing protologues ...");
 185                         ImageImportConfigurator imageConfigurator = ImageImportConfigurator.NewInstance(
 186                                         PalmaeProtologueActivator.sourceFile, cdmDestination, PalmaeProtologueImport.class);
 187                         imageConfigurator.setSecUuid(secUuid);
 188
 189                         CdmDefaultImport<IImportConfigurator> imageImporter = new CdmDefaultImport<IImportConfigurator>();
 190                         imageImporter.invoke(imageConfigurator);
 191                         System.out.println("End importing protologues ...");
 192                 }
 193                 if (includeMediaProtologue){
 194                         System.out.println("Start importing protologues from \\\\media...");
 195                         String protologueSource = "\\\\media\\EditWP6\\palmae\\protologe";
 196                         String urlString = "http://wp5.e-taxonomy.eu/media/palmae/protologe/";
 197                         File source = new File (protologueSource);
 198
 199                         PalmaeProtologueImportConfigurator protologConfig = PalmaeProtologueImportConfigurator.NewInstance(protologueSource, cdmDestination, urlString);
 200                         CdmDefaultImport<IImportConfigurator> cdmImport = new CdmDefaultImport<IImportConfigurator>();
 201
 202                         //protologConfig.setDoFacts(doDescriptions);
 203                         protologConfig.setCheck(check);
 204                         protologConfig.setDbSchemaValidation(DbSchemaValidation.UPDATE);
 205
 206                         protologConfig.setSource(source);
 207                         success &= cdmImport.invoke(protologConfig);
 208
 209                         System.out.println("End importing protologues ...");
 210                 }
 211
 212                 if (includeTaxonX){
 213                         System.out.println("Start importing taxonX ...");
 214                         PalmaeTaxonXImportActivator taxonXimporter = new PalmaeTaxonXImportActivator();
 215                         PalmaeTaxonXImportActivator.cdmDestination = cdmDestination;
 216                         success &= taxonXimporter.runImport();
 217                         System.out.println("End importing taxonX ...");
 218                 }
 219
 220                 String strSuccess = "";
 221                 if (success == false){
 222                         strSuccess = "not ";
 223                 }
 224                 System.out.println("Import " + strSuccess + "successful");
 225
 226         }
 227
 228 }