cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/dto/DerivateHierarchyDTO.java

   1 package eu.etaxonomy.cdm.api.service.dto;
   2
   3 import java.net.URI;
   4 import java.util.ArrayList;
   5 import java.util.HashMap;
   6 import java.util.List;
   7 import java.util.Map;
   8
   9 import org.hibernate.envers.tools.Pair;
  10
  11 public class DerivateHierarchyDTO {
  12
  13         //Filter Flags
  14         private boolean hasDna;
  15         private boolean hasDetailImage;
  16
  17         //Row Attributes
  18         private String country;
  19         private String collection;
  20         private String date;
  21         private String herbarium;
  22         private boolean hasType;
  23         private boolean hasSpecimenScan;
  24
  25         //Detail pop-down
  26         private String taxonName;
  27         private String protologue;
  28         private String citation;
  29         private Map<String, List<String>> types;
  30         private List<Pair<String, String>> specimenScans;
  31         private List<MolecularData> molecularDataList;
  32         private List<Pair<String, String>> detailImages;
  33
  34         /**
  35      * @return the molecularData
  36      */
  37     public List<MolecularData> getMolecularDataList() {
  38         return molecularDataList;
  39     }
  40
  41     public MolecularData addProviderLink(URI uri, String linkText) {
  42         if(this.molecularDataList==null){
  43             molecularDataList = new ArrayList<DerivateHierarchyDTO.MolecularData>();
  44         }
  45         MolecularData molecularData = new MolecularData(new Link(uri, linkText));
  46         this.molecularDataList.add(molecularData);
  47         return molecularData;
  48     }
  49
  50     /**
  51      * @return the hasDna
  52      */
  53     public boolean isHasDna() {
  54         return hasDna;
  55     }
  56     /**
  57      * @param hasDna the hasDna to set
  58      */
  59     public void setHasDna(boolean hasDna) {
  60         this.hasDna = hasDna;
  61     }
  62     /**
  63      * @return the hasDetailImage
  64      */
  65     public boolean isHasDetailImage() {
  66         return hasDetailImage;
  67     }
  68     /**
  69      * @param hasDetailImage the hasDetailImage to set
  70      */
  71     public void setHasDetailImage(boolean hasDetailImage) {
  72         this.hasDetailImage = hasDetailImage;
  73     }
  74     /**
  75      * @return the country
  76      */
  77     public String getCountry() {
  78         return country;
  79     }
  80     /**
  81      * @param country the country to set
  82      */
  83     public void setCountry(String country) {
  84         this.country = country;
  85     }
  86     /**
  87      * @return the collection
  88      */
  89     public String getCollection() {
  90         return collection;
  91     }
  92     /**
  93      * @param collection the collection to set
  94      */
  95     public void setCollection(String collection) {
  96         this.collection = collection;
  97     }
  98     /**
  99      * @return the date
 100      */
 101     public String getDate() {
 102         return date;
 103     }
 104     /**
 105      * @param date the date to set
 106      */
 107     public void setDate(String date) {
 108         this.date = date;
 109     }
 110     /**
 111      * @return the herbarium
 112      */
 113     public String getHerbarium() {
 114         return herbarium;
 115     }
 116     /**
 117      * @param herbarium the herbarium to set
 118      */
 119     public void setHerbarium(String herbarium) {
 120         this.herbarium = herbarium;
 121     }
 122     /**
 123      * @return the hasType
 124      */
 125     public boolean isHasType() {
 126         return hasType;
 127     }
 128     /**
 129      * @param hasType the hasType to set
 130      */
 131     public void setHasType(boolean hasType) {
 132         this.hasType = hasType;
 133     }
 134     /**
 135      * @return the hasSpecimenScan
 136      */
 137     public boolean isHasSpecimenScan() {
 138         return hasSpecimenScan;
 139     }
 140     /**
 141      * @param hasSpecimenScan the hasSpecimenScan to set
 142      */
 143     public void setHasSpecimenScan(boolean hasSpecimenScan) {
 144         this.hasSpecimenScan = hasSpecimenScan;
 145     }
 146     /**
 147      * @return the taxonName
 148      */
 149     public String getTaxonName() {
 150         return taxonName;
 151     }
 152     /**
 153      * @param taxonName the taxonName to set
 154      */
 155     public void setTaxonName(String taxonName) {
 156         this.taxonName = taxonName;
 157     }
 158     /**
 159      * @return the protologue
 160      */
 161     public String getProtologue() {
 162         return protologue;
 163     }
 164     /**
 165      * @param protologue the protologue to set
 166      */
 167     public void setProtologue(String protologue) {
 168         this.protologue = protologue;
 169     }
 170     /**
 171      * @return the citation
 172      */
 173     public String getCitation() {
 174         return citation;
 175     }
 176     /**
 177      * @param citation the citation to set
 178      */
 179     public void setCitation(String citation) {
 180         this.citation = citation;
 181     }
 182
 183     /**
 184      * @param types the types to set
 185      */
 186     public void setTypes(Map<String, List<String>> types) {
 187         this.types = types;
 188     }
 189     /**
 190      * @return the types
 191      */
 192     public Map<String, List<String>> getTypes() {
 193         return types;
 194     }
 195     public void addTypes(String typeStatus, String accessionNumber){
 196         if(types==null){
 197             types = new HashMap<String, List<String>>();
 198         }
 199         List<String> list = types.get(typeStatus);
 200         if(list==null){
 201             list = new ArrayList<String>();
 202         }
 203         list.add(accessionNumber);
 204         types.put(typeStatus, list);
 205     }
 206
 207     /**
 208      * @param specimenScans the specimenScans to set
 209      */
 210     public void setSpecimenScans(List<Pair<String, String>> specimenScans) {
 211         this.specimenScans = specimenScans;
 212     }
 213     /**
 214      * @return the specimenScans
 215      */
 216     public List<Pair<String, String>> getSpecimenScans() {
 217         return specimenScans;
 218     }
 219
 220     public void addSpecimenScan(String uri, String herbarium){
 221         if(specimenScans==null){
 222             specimenScans = new ArrayList<Pair<String,String>>();
 223         }
 224         specimenScans.add(new Pair<String, String>(uri, herbarium));
 225     }
 226
 227     /**
 228      * @return the detailImages
 229      */
 230     public List<Pair<String, String>> getDetailImages() {
 231         return detailImages;
 232     }
 233     /**
 234      * @param detailImages the detailImages to set
 235      */
 236     public void setDetailImages(List<Pair<String, String>> detailImages) {
 237         this.detailImages = detailImages;
 238     }
 239
 240     public void addDetailImage(String uri, String motif){
 241         if(detailImages==null){
 242             detailImages = new ArrayList<Pair<String,String>>();
 243         }
 244         detailImages.add(new Pair<String, String>(uri, motif));
 245     }
 246
 247     public class MolecularData{
 248         private final Link providerLink;
 249         private List<ContigFile> contigFiles;
 250
 251         public MolecularData(Link providerLink) {
 252             super();
 253             this.providerLink = providerLink;
 254         }
 255
 256         public ContigFile addContigFile(URI uri, String linkText){
 257             if(contigFiles==null){
 258                 contigFiles = new ArrayList<DerivateHierarchyDTO.ContigFile>();
 259             }
 260             ContigFile contigFile = new ContigFile(new Link(uri, linkText));
 261             contigFiles.add(contigFile);
 262             return contigFile;
 263         }
 264
 265         public synchronized Link getProviderLink() {
 266             return providerLink;
 267         }
 268
 269         public List<ContigFile> getContigFiles() {
 270             return contigFiles;
 271         }
 272
 273     }
 274
 275     public class ContigFile{
 276         private final Link contigLink;
 277         private List<Link> primerLinks;
 278
 279         public ContigFile(Link contigLink) {
 280             this.contigLink = contigLink;
 281         }
 282
 283         public void addPrimerLink(URI uri, String linkText){
 284             if(primerLinks==null){
 285                 primerLinks = new ArrayList<DerivateHierarchyDTO.Link>();
 286             }
 287             primerLinks.add(new Link(uri, linkText));
 288         }
 289
 290         public Link getContigLink() {
 291             return contigLink;
 292         }
 293
 294         public List<Link> getPrimerLinks() {
 295             return primerLinks;
 296         }
 297
 298     }
 299
 300     public class Link{
 301         private String linkText;
 302         private URI uri;
 303
 304         public Link(URI uri, String linkText) {
 305             super();
 306             this.linkText = linkText;
 307             this.uri = uri;
 308         }
 309         /**
 310          * @return the linkText
 311          */
 312         public synchronized String getLinkText() {
 313             return linkText;
 314         }
 315         /**
 316          * @param linkText the linkText to set
 317          */
 318         public synchronized void setLinkText(String linkText) {
 319             this.linkText = linkText;
 320         }
 321         /**
 322          * @return the uri
 323          */
 324         public synchronized URI getUri() {
 325             return uri;
 326         }
 327         /**
 328          * @param uri the uri to set
 329          */
 330         public synchronized void setUri(URI uri) {
 331             this.uri = uri;
 332         }
 333         /* (non-Javadoc)
 334          * @see java.lang.Object#hashCode()
 335          */
 336         @Override
 337         public int hashCode() {
 338             final int prime = 31;
 339             int result = 1;
 340             result = prime * result + ((linkText == null) ? 0 : linkText.hashCode());
 341             result = prime * result + ((uri == null) ? 0 : uri.hashCode());
 342             return result;
 343         }
 344         /* (non-Javadoc)
 345          * @see java.lang.Object#equals(java.lang.Object)
 346          */
 347         @Override
 348         public boolean equals(Object obj) {
 349             if (this == obj) {
 350                 return true;
 351             }
 352             if (obj == null) {
 353                 return false;
 354             }
 355             if (getClass() != obj.getClass()) {
 356                 return false;
 357             }
 358             Link other = (Link) obj;
 359             if (linkText == null) {
 360                 if (other.linkText != null) {
 361                     return false;
 362                 }
 363             } else if (!linkText.equals(other.linkText)) {
 364                 return false;
 365             }
 366             if (uri == null) {
 367                 if (other.uri != null) {
 368                     return false;
 369                 }
 370             } else if (!uri.equals(other.uri)) {
 371                 return false;
 372             }
 373             return true;
 374         }
 375     }
 376
 377 }