cdmlib-apps.git
4 years agoref #1444 fix reference type handling for ERMS
Andreas Müller [Sat, 28 Sep 2019 17:02:11 +0000 (19:02 +0200)]
ref #1444 fix reference type handling for ERMS

4 years agoref #1444, ref #8508, ref #8509 handle taxon.cacheCitation in ERMS
Andreas Müller [Sat, 28 Sep 2019 17:00:26 +0000 (19:00 +0200)]
ref #1444, ref #8508, ref #8509  handle taxon.cacheCitation in ERMS

4 years agocleanup
Andreas Müller [Sat, 28 Sep 2019 16:56:45 +0000 (18:56 +0200)]
cleanup

4 years agoref #1444, ref #8508, ref #8509 handle SpeciesExpertName in ERMS
Andreas Müller [Fri, 27 Sep 2019 15:52:29 +0000 (17:52 +0200)]
ref #1444, ref #8508, ref #8509  handle SpeciesExpertName in ERMS

4 years agoadapt classes to changes in DbAnnotationMapper with excluded set
Andreas Müller [Fri, 27 Sep 2019 15:46:11 +0000 (17:46 +0200)]
adapt classes to changes in DbAnnotationMapper with excluded set

4 years agoref #8509 rename old PESI factual data exports
Andreas Müller [Fri, 27 Sep 2019 15:45:02 +0000 (17:45 +0200)]
ref #8509 rename old PESI factual data exports

4 years agoadapt classes to changes in DbAnnotationMapper with excluded set
Andreas Müller [Fri, 27 Sep 2019 15:43:18 +0000 (17:43 +0200)]
adapt classes to changes in DbAnnotationMapper with excluded set

4 years agocleanup
Andreas Müller [Fri, 27 Sep 2019 09:17:26 +0000 (11:17 +0200)]
cleanup

4 years agoref #8508, ref #8509, ref #1444 implement ERMS ref types
Andreas Müller [Thu, 26 Sep 2019 13:04:12 +0000 (15:04 +0200)]
ref #8508, ref #8509, ref #1444 implement ERMS ref types

4 years agoadapt BerlinModelNameRelationExport to new NameService.listNameRelationships
Andreas Müller [Thu, 26 Sep 2019 09:40:10 +0000 (11:40 +0200)]
adapt BerlinModelNameRelationExport to new NameService.listNameRelationships

4 years agoref #8508, ref #8509, ref #1444 latest changes to ERMS import and export activators
Andreas Müller [Thu, 26 Sep 2019 09:39:35 +0000 (11:39 +0200)]
ref #8508, ref #8509, ref #1444 latest changes to ERMS import and export activators

4 years agoref #8508, ref #8509, ref #1444 fix source use for ERMS
Andreas Müller [Thu, 26 Sep 2019 09:38:52 +0000 (11:38 +0200)]
ref #8508, ref #8509, ref #1444 fix source use for ERMS

4 years agoref #8508 latest changes to PesiErmsValidator
Andreas Müller [Thu, 26 Sep 2019 09:37:38 +0000 (11:37 +0200)]
ref #8508 latest changes to PesiErmsValidator

4 years agoref #8509 fix RelTaxon export for ERMS / PESI
Andreas Müller [Thu, 26 Sep 2019 09:37:11 +0000 (11:37 +0200)]
ref #8509 fix RelTaxon export for ERMS / PESI

4 years agoref #8509 fix missing rank for Biota
Andreas Müller [Thu, 26 Sep 2019 09:35:12 +0000 (11:35 +0200)]
ref #8509  fix missing rank for Biota

4 years agocleanup
Andreas Müller [Thu, 26 Sep 2019 09:33:47 +0000 (11:33 +0200)]
cleanup

4 years agoref #8508, ref #8509, ref #1444 add additional taxon source handling for ERMS/PESI
Andreas Müller [Thu, 26 Sep 2019 09:25:45 +0000 (11:25 +0200)]
ref #8508, ref #8509, ref #1444 add additional taxon source handling for ERMS/PESI

4 years agoref #8509 fix missing IsraeliExclusiveEconomicZone issue
Andreas Müller [Wed, 18 Sep 2019 08:49:01 +0000 (10:49 +0200)]
ref #8509 fix missing IsraeliExclusiveEconomicZone issue

4 years agoref #1444, ref #8508, ref #8509 improve ERMS notes pipeline
Andreas Müller [Wed, 18 Sep 2019 08:47:02 +0000 (10:47 +0200)]
ref #1444, ref #8508, ref #8509 improve ERMS notes pipeline

4 years agoref #1444, ref #8508, ref #8508 Finish ERMS image import and some export improvement...
Andreas Müller [Wed, 18 Sep 2019 08:44:39 +0000 (10:44 +0200)]
ref #1444, ref #8508, ref #8508 Finish ERMS image import and some export improvement (not yet ready)

4 years agocleanup
Andreas Müller [Wed, 18 Sep 2019 08:41:36 +0000 (10:41 +0200)]
cleanup

4 years agoref #8509 increase number of taxa for description export partition
Andreas Müller [Tue, 17 Sep 2019 12:37:44 +0000 (14:37 +0200)]
ref  #8509 increase number of taxa for description export partition

4 years agoref #1444, ref #8508, ref #8509 some improvements on ERMS taxon source pipeline
Andreas Müller [Tue, 17 Sep 2019 12:36:18 +0000 (14:36 +0200)]
ref #1444, ref #8508, ref #8509  some improvements on ERMS taxon source pipeline

4 years agoref #1444, ref #8508, ref #8509 some improvements on ERMS notes and source uses...
Andreas Müller [Tue, 17 Sep 2019 12:35:00 +0000 (14:35 +0200)]
ref #1444, ref #8508, ref #8509  some improvements on ERMS notes and source uses pipeline

4 years agoref #1444, ref #8508, ref #8509 improve ERMS vernacular name transformations
Andreas Müller [Tue, 17 Sep 2019 12:32:58 +0000 (14:32 +0200)]
ref #1444, ref #8508, ref #8509  improve ERMS vernacular name transformations

4 years agoref #1444, ref #8508, ref #8509 improve ERMS distribution pipeline
Andreas Müller [Tue, 17 Sep 2019 12:30:29 +0000 (14:30 +0200)]
ref #1444, ref #8508, ref #8509  improve ERMS distribution pipeline

4 years agoref #8509 improve isPesi taxon handling for export
Andreas Müller [Tue, 17 Sep 2019 12:24:14 +0000 (14:24 +0200)]
ref #8509 improve isPesi taxon handling for export

4 years agoref #1444, ref #8508, ref #8509 improve rank handling in ERMS pipeline (II)
Andreas Müller [Tue, 17 Sep 2019 12:23:05 +0000 (14:23 +0200)]
ref #1444, ref #8508, ref #8509 improve rank handling in ERMS pipeline (II)

4 years agoref #8509 latest changes to PesiExportActivatorERMS
Andreas Müller [Tue, 17 Sep 2019 12:19:52 +0000 (14:19 +0200)]
ref #8509 latest changes to PesiExportActivatorERMS

4 years agoref #1444 latest changes to ErmsImportActivator
Andreas Müller [Tue, 17 Sep 2019 12:19:11 +0000 (14:19 +0200)]
ref #1444 latest changes to ErmsImportActivator

4 years agoref #1444, ref #8508, ref #8509 improve rank handling in ERMS pipeline
Andreas Müller [Tue, 17 Sep 2019 12:18:16 +0000 (14:18 +0200)]
ref #1444, ref #8508, ref #8509 improve rank handling in ERMS pipeline

4 years agoref #8509 adapt log4j.properties for PESI export
Andreas Müller [Tue, 17 Sep 2019 12:10:26 +0000 (14:10 +0200)]
ref #8509 adapt log4j.properties for PESI export

4 years agoadapt FaueEuErmsMergeActivator to TaxonName.addRelationship changes
Andreas Müller [Tue, 17 Sep 2019 12:09:46 +0000 (14:09 +0200)]
adapt FaueEuErmsMergeActivator to TaxonName.addRelationship changes

4 years agoref #1444 adapt ERMS vernacular name import
Andreas Müller [Tue, 17 Sep 2019 12:08:39 +0000 (14:08 +0200)]
ref  #1444 adapt ERMS vernacular name import

4 years agoref #8509 handle doEmpty tables for PesiDescriptionExport
Andreas Müller [Tue, 17 Sep 2019 12:07:26 +0000 (14:07 +0200)]
ref #8509 handle doEmpty tables for PesiDescriptionExport

4 years agoadapt FaueEuTaxonNameImport to TaxonName.addRelationship changes
Andreas Müller [Tue, 17 Sep 2019 12:05:24 +0000 (14:05 +0200)]
adapt FaueEuTaxonNameImport to TaxonName.addRelationship changes

4 years agoref #8508 latest changes to ERMS pipeline validation
Andreas Müller [Tue, 17 Sep 2019 12:04:37 +0000 (14:04 +0200)]
ref #8508 latest changes to ERMS pipeline validation

4 years agocleanup
Andreas Müller [Tue, 17 Sep 2019 12:03:57 +0000 (14:03 +0200)]
cleanup

4 years agoadapt app-import to changes in taxonName.addRelationship
Andreas Müller [Mon, 16 Sep 2019 10:45:26 +0000 (12:45 +0200)]
adapt app-import to changes in taxonName.addRelationship

4 years agocleanup
Andreas Müller [Thu, 12 Sep 2019 08:36:46 +0000 (10:36 +0200)]
cleanup

4 years agoref #1444 fix author handling for ERMS sources import
Andreas Müller [Wed, 11 Sep 2019 11:40:09 +0000 (13:40 +0200)]
ref #1444 fix author handling for ERMS sources import

4 years agoref #1444 fix taxon handling for source of synonymy (but probably not yet ready and...
Andreas Müller [Wed, 11 Sep 2019 11:39:33 +0000 (13:39 +0200)]
ref #1444 fix taxon handling for source of synonymy (but probably not yet ready and not yet implemented for export)

4 years agoref #8508 latest changes to ERMS pipeline validator
Andreas Müller [Wed, 11 Sep 2019 11:38:06 +0000 (13:38 +0200)]
ref #8508 latest changes to ERMS pipeline validator

4 years agocleanup
Andreas Müller [Wed, 11 Sep 2019 11:37:10 +0000 (13:37 +0200)]
cleanup

4 years agoref #8509 add last action mapping to PesiDescriptionExport
Andreas Müller [Wed, 11 Sep 2019 11:36:25 +0000 (13:36 +0200)]
ref #8509  add last action mapping to PesiDescriptionExport

4 years agoref #8509 fix empty list bug for pesi RelTaxon export
Andreas Müller [Wed, 11 Sep 2019 11:35:36 +0000 (13:35 +0200)]
ref #8509  fix empty list bug for pesi RelTaxon export

4 years agoref #8509 cleanup and handle nomCode not as class variable
Andreas Müller [Wed, 11 Sep 2019 11:34:45 +0000 (13:34 +0200)]
ref #8509  cleanup and handle nomCode not as class variable

4 years agoref #1444 improve vernacular import (ERMS)
Andreas Müller [Wed, 11 Sep 2019 11:29:52 +0000 (13:29 +0200)]
ref #1444 improve vernacular import (ERMS)

4 years agoref #8509 add Subterclass, Parvorder and Infrakingdom, adapt number for (sub)section...
Andreas Müller [Wed, 11 Sep 2019 11:26:18 +0000 (13:26 +0200)]
ref #8509  add Subterclass, Parvorder and Infrakingdom, adapt number for (sub)section, make (sub)division and (sub)phylum equal and some other improvements for rank handling

4 years agocleanup
Andreas Müller [Wed, 11 Sep 2019 11:17:16 +0000 (13:17 +0200)]
cleanup

4 years agoref #8508 improve ERMS validation
Andreas Müller [Thu, 5 Sep 2019 19:52:10 +0000 (21:52 +0200)]
ref #8508 improve ERMS validation

4 years agoref #1444 force titleCache update for ERMS import
Andreas Müller [Thu, 5 Sep 2019 19:51:37 +0000 (21:51 +0200)]
ref #1444 force titleCache update for ERMS import

4 years agoref #8508 improve import-export pipeline for ERMS
Andreas Müller [Thu, 5 Sep 2019 19:51:01 +0000 (21:51 +0200)]
ref #8508 improve import-export pipeline for ERMS

4 years agocleanup
Andreas Müller [Thu, 5 Sep 2019 19:49:49 +0000 (21:49 +0200)]
cleanup

4 years agoref #1444, ref #8509 Updates for ERMS reference handling
Andreas Müller [Thu, 5 Sep 2019 19:49:24 +0000 (21:49 +0200)]
ref #1444, ref #8509 Updates for ERMS reference handling

4 years agoref #1444, ref #8509 LastAction(Date) handling for ERMS
Andreas Müller [Thu, 5 Sep 2019 19:47:09 +0000 (21:47 +0200)]
ref #1444, ref #8509 LastAction(Date) handling for ERMS

4 years agominor
Andreas Müller [Thu, 5 Sep 2019 16:59:04 +0000 (18:59 +0200)]
minor

4 years agoref #8104 adapt CubaExcelImport to lastNamePart
Andreas Müller [Thu, 5 Sep 2019 16:57:19 +0000 (18:57 +0200)]
ref #8104 adapt CubaExcelImport to lastNamePart

4 years agofix #8513 adapt some Activators to missing CdmUtils method
Andreas Müller [Thu, 5 Sep 2019 16:56:08 +0000 (18:56 +0200)]
fix #8513 adapt some Activators to missing CdmUtils method

4 years agominor
Andreas Müller [Mon, 2 Sep 2019 15:30:05 +0000 (17:30 +0200)]
minor

4 years agonew PESI Source and some cleanup
Andreas Müller [Mon, 2 Sep 2019 15:29:19 +0000 (17:29 +0200)]
new PESI Source and some cleanup

4 years agoref #8509 link and notes for ERMS source export
Andreas Müller [Mon, 2 Sep 2019 15:28:51 +0000 (17:28 +0200)]
ref #8509 link and notes for ERMS source export

4 years agoref #8509 improve findKingdomIdFromTreeIndex
Andreas Müller [Mon, 2 Sep 2019 14:59:23 +0000 (16:59 +0200)]
ref #8509 improve  findKingdomIdFromTreeIndex

4 years agoref #8508 further improvements to ERMS pipeline validator
Andreas Müller [Mon, 2 Sep 2019 14:57:46 +0000 (16:57 +0200)]
ref #8508 further improvements to ERMS pipeline validator

4 years agocleanup
Andreas Müller [Mon, 2 Sep 2019 14:56:54 +0000 (16:56 +0200)]
cleanup

4 years agoref #1444 add year to ErmsReferenceImport and not yet handled for source_doi
Andreas Müller [Mon, 2 Sep 2019 14:55:24 +0000 (16:55 +0200)]
ref #1444 add year to ErmsReferenceImport and not yet handled for source_doi

4 years agocleanup and remove pureNames from ERMSExport (not existing)
Andreas Müller [Mon, 2 Sep 2019 14:54:24 +0000 (16:54 +0200)]
cleanup and remove pureNames from ERMSExport (not existing)

4 years agoref #1444 minor changes in ErmsImportActivator
Andreas Müller [Mon, 2 Sep 2019 14:49:05 +0000 (16:49 +0200)]
ref #1444 minor changes in ErmsImportActivator

4 years agoref #8509 latest changes to PesiExportActivatorERMS
Andreas Müller [Sun, 1 Sep 2019 23:19:57 +0000 (01:19 +0200)]
ref #8509 latest changes to PesiExportActivatorERMS

4 years agoref #8509 fix TaxonName id finding
Andreas Müller [Sun, 1 Sep 2019 23:19:13 +0000 (01:19 +0200)]
ref #8509 fix TaxonName id finding

4 years agocleanup
Andreas Müller [Sun, 1 Sep 2019 23:18:00 +0000 (01:18 +0200)]
cleanup

4 years agoref #8508 add some more columns to Reference validation
Andreas Müller [Sun, 1 Sep 2019 23:15:41 +0000 (01:15 +0200)]
ref #8508 add some more columns to Reference validation

4 years agoref #8509 update PesiExportActivatorERMS
Andreas Müller [Sun, 1 Sep 2019 21:30:39 +0000 (23:30 +0200)]
ref #8509 update PesiExportActivatorERMS

4 years agoref #8509 fix synonym handling in PesiTransformer
Andreas Müller [Sun, 1 Sep 2019 21:22:20 +0000 (23:22 +0200)]
ref #8509 fix synonym handling in PesiTransformer

4 years agoref #8509 handle ClassCastException for Kingdom taxa
Andreas Müller [Sun, 1 Sep 2019 21:21:19 +0000 (23:21 +0200)]
ref #8509 handle ClassCastException for Kingdom taxa

4 years agoref #8509 update PesiExportActivatorERMS
Andreas Müller [Sun, 1 Sep 2019 21:20:11 +0000 (23:20 +0200)]
ref #8509 update PesiExportActivatorERMS

4 years agocleanup
Andreas Müller [Sun, 1 Sep 2019 21:14:48 +0000 (23:14 +0200)]
cleanup

4 years agoref #8508 add single reference diff to ERMS pipeline validation
Andreas Müller [Sun, 1 Sep 2019 21:08:19 +0000 (23:08 +0200)]
ref #8508 add single reference diff to ERMS pipeline validation

4 years agoref #8508 add first ERMS pipeline tests
Andreas Müller [Sun, 1 Sep 2019 16:59:37 +0000 (18:59 +0200)]
ref #8508 add first ERMS pipeline tests

4 years agoref #8508 add first ERMS pipeline tests
Andreas Müller [Sun, 1 Sep 2019 16:23:14 +0000 (18:23 +0200)]
ref #8508 add first ERMS pipeline tests

4 years agoref #8509 changes to ERMS export activator
Andreas Müller [Sun, 1 Sep 2019 16:21:41 +0000 (18:21 +0200)]
ref #8509 changes to ERMS export activator

4 years agoref #1444 latest changes on ERMS import
Andreas Müller [Sun, 1 Sep 2019 16:07:37 +0000 (18:07 +0200)]
ref #1444 latest changes on ERMS import

4 years agocleanup
Andreas Müller [Sun, 1 Sep 2019 15:58:12 +0000 (17:58 +0200)]
cleanup

4 years agoref #1444 handle truncated source.name (reference.titleCache)
Andreas Müller [Sat, 31 Aug 2019 13:00:16 +0000 (15:00 +0200)]
ref #1444 handle truncated source.name (reference.titleCache)

4 years agocleanup
Andreas Müller [Sat, 31 Aug 2019 12:59:00 +0000 (14:59 +0200)]
cleanup

4 years agoref #1444 rename ERMS transformer uuids
Andreas Müller [Sat, 31 Aug 2019 12:56:52 +0000 (14:56 +0200)]
ref #1444 rename ERMS transformer uuids

4 years agosome changes to activators
Andreas Müller [Sat, 31 Aug 2019 12:51:55 +0000 (14:51 +0200)]
some changes to activators

4 years agoref #1444 update pesi/erms sources and destinations
Andreas Müller [Sat, 31 Aug 2019 12:50:31 +0000 (14:50 +0200)]
ref #1444 update pesi/erms sources and destinations

4 years agotry to fix some compile errors with FeaturNode.NewInstance
Andreas Müller [Fri, 30 Aug 2019 14:54:26 +0000 (16:54 +0200)]
try to fix some compile errors with FeaturNode.NewInstance

4 years agoadapt erms destination and some minor cleanup
Andreas Müller [Fri, 30 Aug 2019 14:41:25 +0000 (16:41 +0200)]
adapt erms destination and some minor cleanup

4 years agocleanup
Andreas Müller [Fri, 30 Aug 2019 14:40:06 +0000 (16:40 +0200)]
cleanup

4 years agoref #8499 committed additional parameter import for E+M
Andreas Müller [Thu, 29 Aug 2019 07:26:36 +0000 (09:26 +0200)]
ref #8499 committed additional parameter import for E+M

4 years agocleanup
Andreas Müller [Thu, 29 Aug 2019 07:09:27 +0000 (09:09 +0200)]
cleanup

4 years agoref #8479 split taxon and description import, remove auditing and some other improvements
Andreas Müller [Thu, 29 Aug 2019 07:09:04 +0000 (09:09 +0200)]
ref #8479 split taxon and description import, remove auditing and some other improvements

4 years agoref #8479 rename taxon node import class
Andreas Müller [Tue, 27 Aug 2019 20:12:45 +0000 (22:12 +0200)]
ref #8479 rename taxon node import class

4 years agoref #8479 add concurrency to configurator
Andreas Müller [Tue, 27 Aug 2019 20:10:29 +0000 (22:10 +0200)]
ref #8479 add concurrency to configurator

4 years agoref #8479 move cdm2cdm methods down to base class
Andreas Müller [Tue, 27 Aug 2019 20:08:56 +0000 (22:08 +0200)]
ref #8479 move cdm2cdm methods down to base class

4 years agoref #8479 concurrency in FauEu2CdmImport and some other improvements(?) like parent...
Andreas Müller [Tue, 27 Aug 2019 14:49:10 +0000 (16:49 +0200)]
ref #8479 concurrency in FauEu2CdmImport and some other improvements(?) like parent handling

4 years agoref #8479 fix duplicate source repo creation
Andreas Müller [Sun, 25 Aug 2019 11:39:13 +0000 (13:39 +0200)]
ref #8479 fix duplicate source repo creation

4 years agocleanup
Andreas Müller [Sun, 25 Aug 2019 11:38:41 +0000 (13:38 +0200)]
cleanup