Andreas Müller [Wed, 22 Jan 2020 10:40:16 +0000 (11:40 +0100)]
ref #1447 implement PESI commandline merger
Andreas Müller [Wed, 22 Jan 2020 10:36:59 +0000 (11:36 +0100)]
ref #2826 improve IF import to PESI (merge) requirements
Andreas Müller [Sat, 18 Jan 2020 15:22:22 +0000 (16:22 +0100)]
ref #2826 handle verbatim years better
Andreas Müller [Sat, 18 Jan 2020 15:21:48 +0000 (16:21 +0100)]
ref #2826 handle ined. authors
Andreas Müller [Sat, 18 Jan 2020 11:20:32 +0000 (12:20 +0100)]
ref #2826 cleanup
Andreas Müller [Sat, 18 Jan 2020 11:19:45 +0000 (12:19 +0100)]
ref #2826 remove not needed cdmTargetClass
Andreas Müller [Sat, 18 Jan 2020 10:45:14 +0000 (11:45 +0100)]
minor, cleanup
Andreas Müller [Tue, 14 Jan 2020 15:27:47 +0000 (16:27 +0100)]
cleanup
Andreas Müller [Tue, 14 Jan 2020 15:23:29 +0000 (16:23 +0100)]
minor changes to PESI Activators
Andreas Müller [Tue, 14 Jan 2020 15:15:27 +0000 (16:15 +0100)]
latest changes to GreeceImageActivator
Andreas Müller [Tue, 14 Jan 2020 15:13:57 +0000 (16:13 +0100)]
ref #1447 handle null and ERMS pseudo taxa and some minor changes
Andreas Müller [Mon, 13 Jan 2020 15:35:11 +0000 (16:35 +0100)]
ref #1447 underscore for parent diff file
Andreas Müller [Mon, 13 Jan 2020 14:11:41 +0000 (15:11 +0100)]
ref #1447 remove unncessary casts and cleanup
Andreas Müller [Mon, 13 Jan 2020 13:48:10 +0000 (14:48 +0100)]
ref #1447 add utf8 to writer
Andreas Müller [Sun, 12 Jan 2020 00:05:38 +0000 (01:05 +0100)]
cleanup
Andreas Müller [Sun, 12 Jan 2020 00:02:09 +0000 (01:02 +0100)]
ref #8643 fix FaEu destination 2
Andreas Müller [Fri, 10 Jan 2020 11:17:30 +0000 (12:17 +0100)]
ref #1447 improve PesiFindIdenticalNamesActivator
Katja Luther [Fri, 10 Jan 2020 09:19:16 +0000 (10:19 +0100)]
revert wrong merge changes on findIdenticalNameActivator
Katja Luther [Fri, 10 Jan 2020 09:10:45 +0000 (10:10 +0100)]
merge changes
Andreas Müller [Mon, 6 Jan 2020 16:01:31 +0000 (17:01 +0100)]
ref #8508, ref #8577 treeindex test for E+M validation and common base class for E+M and Erms validation
Andreas Müller [Mon, 6 Jan 2020 14:40:45 +0000 (15:40 +0100)]
ref #1447 cleanup FaunaEuErmsFindIdenticalNamesActivator
Andreas Müller [Sat, 28 Dec 2019 15:10:54 +0000 (16:10 +0100)]
ref #1444 minor fixes for ErmsImportActivator
Andreas Müller [Sat, 28 Dec 2019 15:09:05 +0000 (16:09 +0100)]
ref #2717 fix sourceFk handling for pure names
Andreas Müller [Sat, 28 Dec 2019 15:06:32 +0000 (16:06 +0100)]
ref #8508 fix and finalize taxon status (cache) validation
Andreas Müller [Sat, 28 Dec 2019 10:45:26 +0000 (11:45 +0100)]
ref #1444, ref #8508, ref #8509 fix ERMS taxon status handling
Andreas Müller [Sat, 28 Dec 2019 09:48:36 +0000 (10:48 +0100)]
ref #8508 further improvements to ERMS validation
Andreas Müller [Fri, 27 Dec 2019 22:16:33 +0000 (23:16 +0100)]
ref #8509 fix sourceFk handling in PESI taxon export
Andreas Müller [Fri, 27 Dec 2019 22:14:35 +0000 (23:14 +0100)]
ref #8509 improve tagged names handling in PESI export (ERMS and others)
Andreas Müller [Fri, 27 Dec 2019 22:11:44 +0000 (23:11 +0100)]
ref #1444, ref #7976 fix erronous subgenus formatting in ERMS
Andreas Müller [Fri, 27 Dec 2019 22:09:59 +0000 (23:09 +0100)]
ref #1444, ref #7976 better logging for unhandled unacceptReason
Andreas Müller [Fri, 27 Dec 2019 21:49:15 +0000 (22:49 +0100)]
cleanup
Andreas Müller [Fri, 27 Dec 2019 08:48:12 +0000 (09:48 +0100)]
ref #8508 improve treeindex validation and remove source type 'i' handling
Andreas Müller [Fri, 27 Dec 2019 08:39:31 +0000 (09:39 +0100)]
ref #1444, ref #2871, ref #7976 improve authorship handling for MAN
Andreas Müller [Fri, 27 Dec 2019 08:37:17 +0000 (09:37 +0100)]
ref #1444 remove 2 taxon status checks from ErmsTaxonImportValidator as they are not correct anymore
- status is now handled via id and tu_accfinal, not via taxonStatus field
Andreas Müller [Thu, 26 Dec 2019 20:12:47 +0000 (21:12 +0100)]
ref #2104 remove fixme from unused PesiNoteSourceExport_Old
Andreas Müller [Thu, 26 Dec 2019 18:29:36 +0000 (19:29 +0100)]
ref #8508 latest changes
Andreas Müller [Thu, 26 Dec 2019 18:28:20 +0000 (19:28 +0100)]
cleanup
Andreas Müller [Thu, 26 Dec 2019 18:21:23 +0000 (19:21 +0100)]
ref #1444, ref #7976 improve misapplication handling in ERMS import
Andreas Müller [Thu, 26 Dec 2019 12:59:01 +0000 (13:59 +0100)]
ref #8508 minor and cleanup
Andreas Müller [Thu, 26 Dec 2019 12:56:51 +0000 (13:56 +0100)]
ref #8509 handle new ERMS quality status "Thematic Editor"
Andreas Müller [Thu, 26 Dec 2019 12:55:23 +0000 (13:55 +0100)]
ref #1444, #8509 fix pipeline handling in ErmsImportActivator
Andreas Müller [Thu, 26 Dec 2019 12:50:27 +0000 (13:50 +0100)]
ref #1444 replace tu_acctaxon by tu_accfinal
Andreas Müller [Tue, 24 Dec 2019 00:52:03 +0000 (01:52 +0100)]
ref #8508 latest changes to ERMS validation
Andreas Müller [Tue, 24 Dec 2019 00:51:18 +0000 (01:51 +0100)]
cleanup
Andreas Müller [Tue, 24 Dec 2019 00:45:56 +0000 (01:45 +0100)]
ref #8509 fix taxonStatus export for ERMS
Andreas Müller [Mon, 23 Dec 2019 20:37:08 +0000 (21:37 +0100)]
cleanup
Andreas Müller [Mon, 23 Dec 2019 20:36:53 +0000 (21:36 +0100)]
ref #2717 remove publish marker and uuidMisappliedCommonName marker handling because not needed anymore
Andreas Müller [Mon, 23 Dec 2019 20:32:41 +0000 (21:32 +0100)]
ref #2717 add 2nd source to EuroMedSourceActivator
Andreas Müller [Mon, 23 Dec 2019 19:56:12 +0000 (20:56 +0100)]
ref #1444 handle missing sourceUse
Andreas Müller [Mon, 23 Dec 2019 19:31:57 +0000 (20:31 +0100)]
ref #1444 minor changes and cleanup
Andreas Müller [Mon, 23 Dec 2019 19:30:14 +0000 (20:30 +0100)]
ref #1444 some changes due to upgrade to ERMS v2019
Andreas Müller [Mon, 23 Dec 2019 19:28:22 +0000 (20:28 +0100)]
ref #1444 add new ERMS source and rename old one
Andreas Müller [Mon, 23 Dec 2019 09:00:07 +0000 (10:00 +0100)]
cleanup and move isIgnoreNull from base configurator to BMconfig only
Andreas Müller [Sun, 22 Dec 2019 22:08:41 +0000 (23:08 +0100)]
ref #2717 some updates to PESI export
Andreas Müller [Sun, 22 Dec 2019 22:06:31 +0000 (23:06 +0100)]
ref #8577 improve E+M export validation
Andreas Müller [Mon, 9 Dec 2019 16:17:52 +0000 (17:17 +0100)]
ref #2717 adapt export for DisplayName, WebShowName etc. to E+M requirements
Andreas Müller [Mon, 9 Dec 2019 16:07:39 +0000 (17:07 +0100)]
adapt E+M activator to new AggregationMode class
Andreas Müller [Mon, 9 Dec 2019 16:07:03 +0000 (17:07 +0100)]
cleanup
Andreas Müller [Mon, 9 Dec 2019 16:06:19 +0000 (17:06 +0100)]
add Serbia + Kosovo, remove NorthAmerica from PESI areas
Andreas Müller [Tue, 3 Dec 2019 08:43:18 +0000 (09:43 +0100)]
minor
Andreas Müller [Fri, 29 Nov 2019 15:27:52 +0000 (16:27 +0100)]
cleanup
Andreas Müller [Fri, 29 Nov 2019 15:12:41 +0000 (16:12 +0100)]
#3945 move some PESI classes to new packages and minor issues
Andreas Müller [Thu, 28 Nov 2019 14:55:58 +0000 (15:55 +0100)]
fix E+M Activator
Andreas Müller [Thu, 28 Nov 2019 14:54:06 +0000 (15:54 +0100)]
cleanup
Andreas Müller [Thu, 28 Nov 2019 14:52:45 +0000 (15:52 +0100)]
update BgbmInstancesUpdater
Andreas Müller [Tue, 19 Nov 2019 00:11:39 +0000 (01:11 +0100)]
ref #8689 some updates to BupleurumExportActivator
Andreas Müller [Mon, 18 Nov 2019 23:33:31 +0000 (00:33 +0100)]
ref #8689 some updates to BupleurumExportActivator
Andreas Müller [Mon, 18 Nov 2019 08:28:59 +0000 (09:28 +0100)]
ref #8651 adapt EuroMedActivator to changes in DistributionAggregation/TransmissionEngine
Andreas Müller [Mon, 18 Nov 2019 08:27:59 +0000 (09:27 +0100)]
ref #8689 move Cdm2Cdm migration classes from cdm-pesi to cdmlib-io and add BupleurumExportActivator
Andreas Müller [Fri, 15 Nov 2019 09:55:38 +0000 (10:55 +0100)]
ref #8651 adapt EuroMedActivator to changes in DistributionAggregation/TransmissionEngine
Andreas Müller [Fri, 15 Nov 2019 09:54:41 +0000 (10:54 +0100)]
ref #8684 fixing compile errors in cdm-pesi
Andreas Müller [Sun, 3 Nov 2019 12:35:26 +0000 (13:35 +0100)]
ref #8643 multiple changes to adapt FauEuPesiExport to current situation
Andreas Müller [Fri, 1 Nov 2019 16:25:45 +0000 (17:25 +0100)]
ref #8643 adapt PesiExportActivatorFE to current state
Andreas Müller [Fri, 1 Nov 2019 16:10:59 +0000 (17:10 +0100)]
cleanup
Andreas Müller [Wed, 30 Oct 2019 22:38:18 +0000 (23:38 +0100)]
fix #8612 final changes to E+MIpniImport
Andreas Müller [Wed, 30 Oct 2019 13:55:51 +0000 (14:55 +0100)]
ref #8612 implementation of E+MIpniImport (near ready)
Katja Luther [Mon, 28 Oct 2019 11:19:41 +0000 (12:19 +0100)]
Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
Andreas Müller [Sat, 26 Oct 2019 06:16:01 +0000 (08:16 +0200)]
cleanup
Andreas Müller [Sat, 26 Oct 2019 06:15:08 +0000 (08:15 +0200)]
ref #8612 first implementation of E+MIpniImport
Katja Luther [Fri, 25 Oct 2019 11:00:15 +0000 (13:00 +0200)]
merging fauna Eu - Erms -continue
Katja Luther [Wed, 23 Oct 2019 08:43:13 +0000 (10:43 +0200)]
remove import TestDatabase
Katja Luther [Wed, 23 Oct 2019 07:31:06 +0000 (09:31 +0200)]
Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
Katja Luther [Wed, 23 Oct 2019 07:30:44 +0000 (09:30 +0200)]
ref #1445: smaller changes in activators
Andreas Müller [Wed, 23 Oct 2019 00:13:49 +0000 (02:13 +0200)]
update E+M mapping csv file
Andreas Müller [Tue, 22 Oct 2019 14:02:41 +0000 (16:02 +0200)]
ref #8479 add import source to FauEu2CDM/CDM-2-CDM import
Andreas Müller [Tue, 22 Oct 2019 13:57:31 +0000 (15:57 +0200)]
cleanup
Andreas Müller [Mon, 21 Oct 2019 12:01:29 +0000 (14:01 +0200)]
cleanup and ref #8587 handle special form as rank for fungi (IF)
Katja Luther [Thu, 17 Oct 2019 12:02:54 +0000 (14:02 +0200)]
Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
Katja Luther [Thu, 17 Oct 2019 12:02:39 +0000 (14:02 +0200)]
ref #1445: adapt merging activator to changes in cdmlib
Andreas Müller [Sat, 12 Oct 2019 22:58:30 +0000 (00:58 +0200)]
ref #8587 handle null rank names in PESI export a bit better
Andreas Müller [Sat, 12 Oct 2019 22:56:18 +0000 (00:56 +0200)]
minor
Andreas Müller [Sat, 12 Oct 2019 22:54:53 +0000 (00:54 +0200)]
ref #2826 fix IF subspecies import, link to genus if species not exists
Andreas Müller [Sat, 12 Oct 2019 22:53:52 +0000 (00:53 +0200)]
adapt some classes to new CommonService.getSourcedObjectSByIdInSource and cleanup
Andreas Müller [Sat, 12 Oct 2019 21:51:39 +0000 (23:51 +0200)]
adapt some classes to new CommonService.getSourcedObjectSByIdInSourceC and cleanup
Andreas Müller [Sat, 12 Oct 2019 21:02:20 +0000 (23:02 +0200)]
cleanup
Andreas Müller [Sat, 12 Oct 2019 10:06:36 +0000 (12:06 +0200)]
ref #8509, ref #8508 some fixes to E+M PESI export and validation
Andreas Müller [Sat, 12 Oct 2019 10:05:25 +0000 (12:05 +0200)]
ref #8509 fix trailing whitespace for reference titleCaches
Andreas Müller [Sat, 12 Oct 2019 10:01:17 +0000 (12:01 +0200)]
ref #8577 cleanup E+M PESI validation
Andreas Müller [Sat, 12 Oct 2019 09:59:40 +0000 (11:59 +0200)]
ref #8587 adapt IF exporter
Andreas Müller [Sat, 12 Oct 2019 09:22:26 +0000 (11:22 +0200)]
ref #2826 cleanup IF import