cdmlib-apps.git
5 years agoref #7796 remove ILDIS Bibliographie NameFacts from E+M import
Andreas Müller [Fri, 12 Oct 2018 07:04:20 +0000 (09:04 +0200)]
ref #7796 remove ILDIS Bibliographie NameFacts from E+M import

5 years agocleanup
Andreas Müller [Wed, 10 Oct 2018 10:54:09 +0000 (12:54 +0200)]
cleanup

5 years agoref #7799 improve performance of authorteam loading
Andreas Müller [Wed, 10 Oct 2018 10:53:51 +0000 (12:53 +0200)]
ref #7799 improve performance of authorteam loading

5 years agoref #7799 and others reinstall null check
Andreas Müller [Wed, 10 Oct 2018 10:52:59 +0000 (12:52 +0200)]
ref #7799 and others reinstall null check

5 years agoadd euromed production to activator
Andreas Müller [Wed, 10 Oct 2018 10:52:10 +0000 (12:52 +0200)]
add euromed production to activator

5 years agoref #7798 implement and improve occurrence.nameUsedInSource import for freetext and...
Andreas Müller [Wed, 10 Oct 2018 10:51:21 +0000 (12:51 +0200)]
ref #7798 implement and improve occurrence.nameUsedInSource import for freetext and referenced names

5 years agosplit occurrence and occurrence source import
Andreas Müller [Wed, 10 Oct 2018 10:48:20 +0000 (12:48 +0200)]
split occurrence and occurrence source import

5 years agoref #7800 parse preliminary RefDetails (first start)
Andreas Müller [Wed, 10 Oct 2018 10:45:41 +0000 (12:45 +0200)]
ref #7800 parse preliminary RefDetails  (first start)

5 years agoref #7799 implement author parsing for AuthorTeam and Reference.RefAuthorString
Andreas Müller [Wed, 10 Oct 2018 10:38:45 +0000 (12:38 +0200)]
ref #7799 implement author parsing for AuthorTeam and Reference.RefAuthorString

5 years agocleanup
Andreas Müller [Wed, 10 Oct 2018 10:35:23 +0000 (12:35 +0200)]
cleanup

5 years agoref #7346 create areas only if vocabulary does not yet exist
Andreas Müller [Wed, 10 Oct 2018 10:16:51 +0000 (12:16 +0200)]
ref #7346  create areas only if vocabulary does not yet exist

5 years agoadd euromed production to destinations
Andreas Müller [Wed, 10 Oct 2018 08:32:21 +0000 (10:32 +0200)]
add euromed production to destinations

5 years agoref #2764 ref #4822 add WolrdDistCompl to query
Andreas Müller [Sat, 29 Sep 2018 16:19:33 +0000 (18:19 +0200)]
ref #2764 ref #4822 add WolrdDistCompl to query

5 years agoimprove commonName import validation
Andreas Müller [Sat, 29 Sep 2018 16:18:20 +0000 (18:18 +0200)]
improve commonName import validation

5 years agoref #7798 import freetext nameInSource for occurrences best way and log all problems
Andreas Müller [Sat, 29 Sep 2018 16:17:54 +0000 (18:17 +0200)]
ref #7798 import freetext nameInSource for occurrences best way and log all problems

5 years agorevert unwanted last commit partly
Andreas Müller [Sat, 29 Sep 2018 09:19:40 +0000 (11:19 +0200)]
revert unwanted last commit partly

5 years agoref #3986 remove It(I) and IT(S) from imported areas
Andreas Müller [Sat, 29 Sep 2018 09:16:50 +0000 (11:16 +0200)]
ref #3986 remove It(I) and IT(S) from imported areas

5 years agoAdd label to EM feature tree
Andreas Müller [Sat, 29 Sep 2018 09:16:05 +0000 (11:16 +0200)]
Add label to EM feature tree

5 years agocleanup
Andreas Müller [Sat, 29 Sep 2018 09:13:33 +0000 (11:13 +0200)]
cleanup

5 years agolatest state for EuroMedActivator
Andreas Müller [Fri, 28 Sep 2018 13:19:35 +0000 (15:19 +0200)]
latest state for EuroMedActivator

5 years agoref #2764 ref #4822 distinguish EM and other areas status handling and use specific...
Andreas Müller [Fri, 28 Sep 2018 13:19:18 +0000 (15:19 +0200)]
ref #2764 ref #4822  distinguish EM and other areas status handling and use specific endemism status and annotation types

5 years agoref #7420 updates to phycobank import according to requirements
Andreas Müller [Thu, 27 Sep 2018 13:27:17 +0000 (15:27 +0200)]
ref #7420 updates to phycobank import according to requirements

5 years agocleanup
Andreas Müller [Tue, 25 Sep 2018 11:35:21 +0000 (13:35 +0200)]
cleanup

5 years agoref #3986 , ref #7346 remove some areas from area import
Andreas Müller [Tue, 25 Sep 2018 11:34:42 +0000 (13:34 +0200)]
ref #3986 , ref #7346 remove some areas from area import

5 years agocleanup
Andreas Müller [Tue, 25 Sep 2018 09:11:35 +0000 (11:11 +0200)]
cleanup

5 years agoref #7346 use E+M area vocabulary for common names
Andreas Müller [Mon, 24 Sep 2018 19:25:37 +0000 (21:25 +0200)]
ref #7346 use E+M area vocabulary for common names

5 years agoref #7440 add common name marker to common name references
Andreas Müller [Sat, 22 Sep 2018 12:20:15 +0000 (14:20 +0200)]
ref #7440 add common name marker to common name references

5 years agocleanup
Andreas Müller [Sat, 22 Sep 2018 12:18:13 +0000 (14:18 +0200)]
cleanup

5 years agofix #7769 implement postulated parental species as extension
Andreas Müller [Tue, 18 Sep 2018 14:22:31 +0000 (16:22 +0200)]
fix #7769 implement postulated parental species as extension

5 years agoref #3992 fix sec/last scrutiny for MANs
Andreas Müller [Tue, 18 Sep 2018 14:20:59 +0000 (16:20 +0200)]
ref #3992  fix sec/last scrutiny for MANs

5 years agocleanup and improve BM validators
Andreas Müller [Tue, 18 Sep 2018 14:14:37 +0000 (16:14 +0200)]
cleanup and improve BM validators

5 years agocleanup
Andreas Müller [Tue, 18 Sep 2018 14:13:59 +0000 (16:13 +0200)]
cleanup

5 years agoremove Cyprus user import
Andreas Müller [Tue, 11 Sep 2018 20:27:23 +0000 (22:27 +0200)]
remove Cyprus user import

5 years agolatest changes to EuroMedActivator (including changes in TaxonRelation ID selection)
Andreas Müller [Sun, 9 Sep 2018 20:15:31 +0000 (22:15 +0200)]
latest changes to EuroMedActivator (including changes in TaxonRelation ID selection)

5 years agofix Berlin Model Occurrence and TaxonRelation import validators
Andreas Müller [Sun, 9 Sep 2018 20:14:34 +0000 (22:14 +0200)]
fix Berlin Model Occurrence and TaxonRelation import validators

5 years agocleanup
Andreas Müller [Sun, 9 Sep 2018 20:12:52 +0000 (22:12 +0200)]
cleanup

5 years agoref #3992 remove logging of last scrutiny taxa with no standard PTRefFk
Andreas Müller [Sun, 9 Sep 2018 20:12:06 +0000 (22:12 +0200)]
ref #3992 remove logging of last scrutiny taxa with no standard PTRefFk

5 years agoref #7420 define WorksheetName as config parameter (needed for Phycobank import)
Andreas Müller [Sun, 9 Sep 2018 20:09:43 +0000 (22:09 +0200)]
ref #7420 define WorksheetName as config parameter (needed for Phycobank import)

5 years agoref #7420 adding phycobank as source
Andreas Müller [Sun, 9 Sep 2018 20:07:05 +0000 (22:07 +0200)]
ref #7420 adding phycobank as source

5 years agocleanup
Andreas Müller [Mon, 3 Sep 2018 19:14:50 +0000 (21:14 +0200)]
cleanup

5 years agocleanup
Andreas Müller [Mon, 3 Sep 2018 17:56:32 +0000 (19:56 +0200)]
cleanup

5 years agoref #3992 adapt EuroMedActivator to last scrutiny changes
Andreas Müller [Mon, 3 Sep 2018 08:45:10 +0000 (10:45 +0200)]
ref #3992 adapt EuroMedActivator to last scrutiny changes

5 years agoadd tests for occurrences sources with unwanted whitespaces
Andreas Müller [Mon, 3 Sep 2018 08:44:14 +0000 (10:44 +0200)]
add tests for occurrences sources with unwanted whitespaces

5 years agoref #3992, ref #7713, ref #3990 add test for differing synonym relation references
Andreas Müller [Mon, 3 Sep 2018 08:43:39 +0000 (10:43 +0200)]
ref #3992, ref #7713, ref #3990 add test for differing synonym relation references

5 years agocleanup
Andreas Müller [Mon, 3 Sep 2018 08:42:42 +0000 (10:42 +0200)]
cleanup

5 years agoref #3992, ref #7713, ref #3990 Atomize last scrutiny references
Andreas Müller [Mon, 3 Sep 2018 08:42:25 +0000 (10:42 +0200)]
ref #3992, ref #7713, ref #3990 Atomize last scrutiny references

5 years agoadapt AlgaTerraTypeImport to new specimen facade signature for kind-of-unit
Andreas Müller [Tue, 21 Aug 2018 06:31:40 +0000 (08:31 +0200)]
adapt AlgaTerraTypeImport to new specimen facade signature for kind-of-unit

5 years agorename IAPT import test package (same name as import package itself)
Andreas Müller [Tue, 21 Aug 2018 06:30:53 +0000 (08:30 +0200)]
rename IAPT import test package (same name as import package itself)

5 years agoref #7664 adapt app-import to typified return types
Andreas Müller [Tue, 21 Aug 2018 06:29:51 +0000 (08:29 +0200)]
ref #7664 adapt app-import to typified return types

5 years agominor
Andreas Müller [Fri, 10 Aug 2018 12:05:46 +0000 (14:05 +0200)]
minor

5 years agoref #7420 first version of phycobank higher classification import
Andreas Müller [Fri, 10 Aug 2018 12:05:09 +0000 (14:05 +0200)]
ref #7420  first version of phycobank higher classification import

6 years agoref #7530 add activators for CaryoSppIdentifier import and WfoAccess import
Andreas Müller [Mon, 30 Jul 2018 11:55:44 +0000 (13:55 +0200)]
ref #7530 add activators for CaryoSppIdentifier import and WfoAccess import

6 years agocleanup
Andreas Müller [Wed, 27 Jun 2018 20:45:00 +0000 (22:45 +0200)]
cleanup

6 years agoupdate cdmlib version to 5.2.0-SNAPSHOT
Andreas Müller [Wed, 27 Jun 2018 20:43:52 +0000 (22:43 +0200)]
update cdmlib version to 5.2.0-SNAPSHOT

6 years agofurther cleanup
Andreas Müller [Tue, 19 Jun 2018 12:38:32 +0000 (14:38 +0200)]
further cleanup

6 years agocleanup not compiling and other issues in app-import and pesi
Andreas Müller [Tue, 19 Jun 2018 12:34:18 +0000 (14:34 +0200)]
cleanup not compiling and other issues in app-import and pesi

6 years agouse E+M specific vocabulary for marker types
Andreas Müller [Mon, 4 Jun 2018 13:35:27 +0000 (15:35 +0200)]
use E+M specific vocabulary for marker types

6 years agoref #7449 try to fix common name import for names with no region and ref #7447 add...
Andreas Müller [Sun, 3 Jun 2018 20:03:45 +0000 (22:03 +0200)]
ref #7449 try to fix common name import for names with no region and ref #7447 add misapplied name common name import source

6 years agoref #7446 cleanup extension handling a bit
Andreas Müller [Sun, 3 Jun 2018 19:53:21 +0000 (21:53 +0200)]
ref #7446 cleanup extension handling a bit

6 years agocleanup
Andreas Müller [Sun, 3 Jun 2018 15:06:05 +0000 (17:06 +0200)]
cleanup

6 years agoref #7446 handle initials as initials in BM/EM import, not extension anymore
Andreas Müller [Sun, 3 Jun 2018 15:05:43 +0000 (17:05 +0200)]
ref #7446 handle initials as initials in BM/EM import, not extension anymore

6 years agoref #7446 deduplicate common name language references in E+M
Andreas Müller [Sun, 3 Jun 2018 14:19:55 +0000 (16:19 +0200)]
ref #7446 deduplicate common name language references in E+M

6 years agoref #7341 validate common names with nameUseInSourceFk = -1
Andreas Müller [Sun, 3 Jun 2018 14:18:56 +0000 (16:18 +0200)]
ref #7341 validate common names with nameUseInSourceFk = -1

6 years agoref #6945 use E+M vocabulary for marker types
Andreas Müller [Sat, 2 Jun 2018 11:08:06 +0000 (13:08 +0200)]
ref #6945 use E+M vocabulary for marker types

6 years agofix #7316 final fix for name relations import
Andreas Müller [Sat, 2 Jun 2018 10:49:49 +0000 (12:49 +0200)]
fix #7316 final fix for name relations import

6 years agochange BM import order for better performance and single run for E+M
Andreas Müller [Sat, 2 Jun 2018 10:46:37 +0000 (12:46 +0200)]
change BM import order for better performance and single run for E+M

6 years agofix occurrence source import
Andreas Müller [Sat, 2 Jun 2018 10:46:05 +0000 (12:46 +0200)]
fix occurrence source import

6 years agoref #6945 implement common name status as markers for recommended and synonym
Andreas Müller [Sat, 2 Jun 2018 10:45:08 +0000 (12:45 +0200)]
ref #6945 implement common name status as markers for recommended and synonym

6 years agoimprove BM orphaned taxon validation
Andreas Müller [Wed, 30 May 2018 19:43:10 +0000 (21:43 +0200)]
improve BM orphaned taxon validation

6 years agoref #7238 correct case for givenname and familyname in BerlinModelAuthorImport
Andreas Müller [Wed, 30 May 2018 19:37:33 +0000 (21:37 +0200)]
ref #7238 correct case for givenname and familyname in BerlinModelAuthorImport

6 years agolatest changes to BgbmInstancesUpdater, E+M Import, GermanSL Import, etct
Andreas Müller [Fri, 18 May 2018 08:17:09 +0000 (10:17 +0200)]
latest changes to BgbmInstancesUpdater, E+M Import, GermanSL Import, etct

6 years agoref #6720 adapt individualCount in cdmlib-app
Andreas Müller [Thu, 17 May 2018 09:46:57 +0000 (11:46 +0200)]
ref #6720 adapt individualCount in cdmlib-app

6 years agoref #7074 adapt Media.mediaCreated in cdmlib-app
Andreas Müller [Thu, 17 May 2018 09:45:55 +0000 (11:45 +0200)]
ref #7074 adapt Media.mediaCreated in cdmlib-app

6 years agoref #6752 stricter use of verbatimDate in cdmlib-app
Andreas Müller [Thu, 17 May 2018 09:43:46 +0000 (11:43 +0200)]
ref #6752 stricter use of verbatimDate in cdmlib-app

6 years agoref #7238 change to familyname and givenname incdmlib-app
Andreas Müller [Thu, 17 May 2018 09:35:59 +0000 (11:35 +0200)]
ref #7238 change to familyname and givenname incdmlib-app

6 years agoupdate poms in cdmlib-apps
Andreas Müller [Thu, 17 May 2018 09:13:27 +0000 (11:13 +0200)]
update poms in cdmlib-apps

6 years agoref #6241 replaced @date by @since in pesi and eflora
Andreas Müller [Wed, 2 May 2018 12:36:54 +0000 (14:36 +0200)]
ref #6241 replaced @date by @since in pesi and eflora

6 years agoref #6241 replaced @created by @since in cdmlib-app
Andreas Müller [Wed, 2 May 2018 12:13:34 +0000 (14:13 +0200)]
ref #6241 replaced @created by @since in cdmlib-app

6 years agocleanup
Andreas Müller [Wed, 25 Apr 2018 12:12:35 +0000 (14:12 +0200)]
cleanup

6 years agoref #5499, ref #6517 latest changes to Edaphobase import (also stable uuids)
Andreas Müller [Wed, 25 Apr 2018 12:02:55 +0000 (14:02 +0200)]
ref #5499, ref #6517 latest changes to Edaphobase import (also stable uuids)

6 years agoref #7369 implement taxonomically valueless taxa with markers
Andreas Müller [Wed, 25 Apr 2018 11:59:30 +0000 (13:59 +0200)]
ref #7369 implement taxonomically valueless taxa with markers

6 years agoref #6241 change @date to @since in appimport
Andreas Müller [Wed, 25 Apr 2018 11:55:43 +0000 (13:55 +0200)]
ref #6241  change @date to @since in appimport

6 years agocleanup BM import
Andreas Müller [Fri, 30 Mar 2018 09:48:07 +0000 (11:48 +0200)]
cleanup BM import

6 years agofix #4347 Handle DOIs in E+M import
Andreas Müller [Mon, 12 Mar 2018 15:13:41 +0000 (16:13 +0100)]
fix #4347  Handle DOIs in E+M import

6 years agocleanup
Andreas Müller [Mon, 12 Mar 2018 15:12:04 +0000 (16:12 +0100)]
cleanup

6 years agoref #5499 fix et al. author import
Andreas Müller [Fri, 9 Mar 2018 20:18:57 +0000 (21:18 +0100)]
ref #5499 fix et al. author import

6 years agoref #5499, ref #7308 improve edaphobas import
Andreas Müller [Fri, 9 Mar 2018 18:54:58 +0000 (19:54 +0100)]
ref #5499, ref #7308 improve edaphobas import

 * offical remarks
 * name additions
 * et al. authors and replace et
 * remove deleted taxa
 * some fixes

6 years agoref #5499 import included in synonyms as accepted taxa
Andreas Müller [Wed, 7 Mar 2018 13:16:17 +0000 (14:16 +0100)]
ref #5499  import included in synonyms as accepted taxa

6 years agocleanup
Andreas Müller [Wed, 7 Mar 2018 13:10:05 +0000 (14:10 +0100)]
cleanup

6 years agoref #5499 latest changes to edaphobase import
Andreas Müller [Mon, 26 Feb 2018 18:52:48 +0000 (19:52 +0100)]
ref #5499 latest changes to edaphobase import

6 years agominor changes to edaphobase import
Andreas Müller [Wed, 31 Jan 2018 13:58:08 +0000 (14:58 +0100)]
minor changes to edaphobase import

6 years agoupdate cuba destination
Andreas Müller [Wed, 31 Jan 2018 13:57:46 +0000 (14:57 +0100)]
update cuba destination

6 years agoref #7209 use git repos instead of svn in cdmlib-apps poms
Andreas Müller [Wed, 31 Jan 2018 13:55:11 +0000 (14:55 +0100)]
ref #7209 use git repos instead of svn in cdmlib-apps poms

6 years agoref #7216 final changes before pteridophyta import for Cuba
Andreas Müller [Thu, 25 Jan 2018 23:02:54 +0000 (00:02 +0100)]
ref #7216 final changes before pteridophyta import for Cuba

6 years agoundo unwanted
Andreas Müller [Thu, 25 Jan 2018 14:09:36 +0000 (15:09 +0100)]
undo unwanted

6 years agoref #7216 use pteridophyta (not spermatophyta) and remove unused alternative family...
Andreas Müller [Thu, 25 Jan 2018 14:08:35 +0000 (15:08 +0100)]
ref #7216 use pteridophyta (not spermatophyta) and remove unused alternative family implementations for Cuba import

6 years ago#7216 use spermatophyta instead of plantae in Cuba import
Andreas Müller [Thu, 25 Jan 2018 12:40:02 +0000 (13:40 +0100)]
#7216 use spermatophyta instead of plantae in Cuba import

6 years agoref #7216 implement pro parte misapplied names for Cuba import
Andreas Müller [Thu, 25 Jan 2018 12:39:22 +0000 (13:39 +0100)]
ref #7216  implement pro parte misapplied names for Cuba import

6 years agoref #7158 fix pro parte misapplied name issues in app-import
Andreas Müller [Thu, 25 Jan 2018 10:30:14 +0000 (11:30 +0100)]
ref #7158 fix pro parte misapplied name issues in app-import

6 years agoref #7216 adapt Cuba import for pteridophytae import
Andreas Müller [Thu, 25 Jan 2018 10:27:23 +0000 (11:27 +0100)]
ref #7216 adapt Cuba import for pteridophytae import