cdmlib-apps.git
5 years agocleanup
Andreas Müller [Mon, 3 Jun 2019 18:04:49 +0000 (20:04 +0200)]
cleanup

5 years agofix VerbatimTimePeriod compile error in IAPT import
Andreas Müller [Mon, 3 Jun 2019 18:03:59 +0000 (20:03 +0200)]
fix VerbatimTimePeriod compile error in IAPT import

5 years agoref #2937 fix GermanSL import in a way that it does not throw exceptions
Andreas Müller [Mon, 3 Jun 2019 14:49:59 +0000 (16:49 +0200)]
ref #2937 fix GermanSL import in a way that it does not throw exceptions

5 years agofinal changes to E+M import
Andreas Müller [Tue, 21 May 2019 20:22:19 +0000 (22:22 +0200)]
final changes to E+M import

5 years agoadd state to getVocabulary for imports
Andreas Müller [Fri, 17 May 2019 11:09:50 +0000 (13:09 +0200)]
add state to getVocabulary for imports

5 years agolog special pro parte relations
Andreas Müller [Thu, 16 May 2019 08:21:42 +0000 (10:21 +0200)]
log special pro parte relations

5 years agoref #7823 add createdUpdated info to occurrences for E+M import
Andreas Müller [Thu, 16 May 2019 08:21:06 +0000 (10:21 +0200)]
ref #7823 add createdUpdated info to occurrences for E+M import

5 years agoref #7823 deduplicate usernames depending on secrefs, use xml imports (and other...
Andreas Müller [Thu, 16 May 2019 08:13:24 +0000 (10:13 +0200)]
ref #7823 deduplicate usernames depending on secrefs, use xml imports (and other imports) as source, not username

5 years agoset all taxrel references to null in E+M import if same as sec
Andreas Müller [Mon, 13 May 2019 19:05:28 +0000 (21:05 +0200)]
set all taxrel references to null in E+M import if same as sec

5 years agoset parent-child references to null in E+M import if same as sec
Andreas Müller [Mon, 13 May 2019 18:21:14 +0000 (20:21 +0200)]
set parent-child references to null in E+M import if same as sec

5 years agolatest changes to GreeceImageActivator
Andreas Müller [Sun, 12 May 2019 06:12:45 +0000 (08:12 +0200)]
latest changes to GreeceImageActivator

5 years agoadd explicit handling for E+M status I(P)
Andreas Müller [Fri, 10 May 2019 10:43:11 +0000 (12:43 +0200)]
add explicit handling for E+M status I(P)

5 years agoref #7346 adapt E+M area import to work correctly
Andreas Müller [Fri, 10 May 2019 10:41:42 +0000 (12:41 +0200)]
ref #7346 adapt E+M area import to work correctly

5 years agoAdd missing explicit sources check to E+M import validation
Andreas Müller [Thu, 9 May 2019 08:27:16 +0000 (10:27 +0200)]
Add missing explicit sources check to E+M import validation

5 years agoremove some areas from E+M area Import
Andreas Müller [Thu, 9 May 2019 08:26:35 +0000 (10:26 +0200)]
remove some areas from E+M area Import

5 years agoref #8257 remove factory method for term node creation in app-import
Andreas Müller [Tue, 7 May 2019 14:10:05 +0000 (16:10 +0200)]
ref #8257 remove factory method for term node creation in app-import

5 years agochange to CaucasusEuroMedActivator
Andreas Müller [Tue, 7 May 2019 12:51:26 +0000 (14:51 +0200)]
change to CaucasusEuroMedActivator

5 years agolatest changes to E+M activator
Andreas Müller [Tue, 7 May 2019 12:51:07 +0000 (14:51 +0200)]
latest changes to E+M activator

5 years agofix ambigous common name areas and special Spanish languages
Andreas Müller [Tue, 7 May 2019 12:49:47 +0000 (14:49 +0200)]
fix ambigous common name areas and special Spanish languages

5 years agouse default description titleCache for E+M
Andreas Müller [Tue, 7 May 2019 12:48:45 +0000 (14:48 +0200)]
use default description titleCache for E+M

5 years agoremove unnessary warning for getObligatoryAttributes to be adapted to new package...
Andreas Müller [Tue, 7 May 2019 12:48:08 +0000 (14:48 +0200)]
remove unnessary warning for getObligatoryAttributes to be adapted to new package structure

5 years agoremove unnecessary super.resetSession calls
Andreas Müller [Tue, 7 May 2019 12:47:10 +0000 (14:47 +0200)]
remove unnecessary super.resetSession calls

5 years agoE+M improve occurrence import for nameInSource
Andreas Müller [Tue, 16 Apr 2019 15:57:19 +0000 (17:57 +0200)]
E+M improve occurrence import for nameInSource

5 years agoE+M error handling for ref or name without author
Andreas Müller [Tue, 16 Apr 2019 15:54:45 +0000 (17:54 +0200)]
E+M error handling for ref or name without author

5 years agominor logging for team IDs
Andreas Müller [Tue, 16 Apr 2019 15:53:06 +0000 (17:53 +0200)]
minor logging for team IDs

5 years agoupdate E+M handling in area vocabulary for Kosovo
Andreas Müller [Tue, 16 Apr 2019 15:51:48 +0000 (17:51 +0200)]
update E+M handling in area vocabulary for Kosovo

5 years agoImport E+M details notes as name notes
Andreas Müller [Sat, 23 Mar 2019 08:37:58 +0000 (09:37 +0100)]
Import E+M details notes as name notes

5 years agoadapt app-import to new AccountStore package
Andreas Müller [Fri, 22 Mar 2019 23:08:16 +0000 (00:08 +0100)]
adapt app-import to new AccountStore package

5 years agoref #7669 latest changes to Greece Willing images import, incl. no barcode import
Andreas Müller [Fri, 22 Mar 2019 17:07:39 +0000 (18:07 +0100)]
ref #7669  latest changes to Greece Willing images import, incl. no barcode import

5 years agodb-name change in IAPTActivator
Andreas Kohlbecker [Thu, 4 Oct 2018 09:47:41 +0000 (11:47 +0200)]
db-name change in IAPTActivator

5 years agoupdate to GreeceImageActivator
Andreas Müller [Tue, 19 Mar 2019 12:47:21 +0000 (13:47 +0100)]
update to GreeceImageActivator

5 years agoupdate mysql driver in commented unitils datasource
Andreas Müller [Tue, 19 Mar 2019 10:55:03 +0000 (11:55 +0100)]
update mysql driver in commented unitils datasource

5 years agoadapt GermanSLImporBase inheritance
Andreas Müller [Tue, 19 Mar 2019 10:44:54 +0000 (11:44 +0100)]
adapt GermanSLImporBase inheritance

5 years agoAdapt imports to tem model changes
Patrick Plitzner [Fri, 15 Mar 2019 07:18:45 +0000 (08:18 +0100)]
Adapt imports to tem model changes

5 years agoE+M specific book recognition?
Andreas Müller [Wed, 6 Mar 2019 16:24:22 +0000 (17:24 +0100)]
E+M specific book recognition?

5 years agominor
Andreas Müller [Wed, 6 Mar 2019 16:20:18 +0000 (17:20 +0100)]
minor

5 years agoref #8162 move FeatureTree and FeatureNode to term package in cdmlib-app
Andreas Müller [Wed, 6 Mar 2019 12:24:47 +0000 (13:24 +0100)]
ref #8162 move FeatureTree and FeatureNode to term package in cdmlib-app

5 years agoref #8162 move OriginalSourceXXX to reference package in cdmlib-app
Andreas Müller [Wed, 6 Mar 2019 12:22:40 +0000 (13:22 +0100)]
ref #8162 move OriginalSourceXXX to reference package in cdmlib-app

5 years agofix merge issue in PlantGlossaryCsvImportState
Andreas Müller [Tue, 5 Mar 2019 15:25:52 +0000 (16:25 +0100)]
fix merge issue in PlantGlossaryCsvImportState

5 years agofix #8162 adapt PlantGlossaryCategoryAsPropertiesImport to new terms package structure
Andreas Müller [Tue, 5 Mar 2019 11:17:46 +0000 (12:17 +0100)]
fix #8162 adapt PlantGlossaryCategoryAsPropertiesImport to new terms package structure

5 years agoMerge branch 'master' into feature8162
Andreas Müller [Tue, 5 Mar 2019 10:49:45 +0000 (11:49 +0100)]
Merge branch 'master' into feature8162

Conflicts:
app-import/src/main/java/eu/etaxonomy/cdm/io/plantglossary/PlantGlossaryCsvImportState.java

5 years agoref #8162 adapt cdmlip-app to new term package structure
Andreas Müller [Mon, 4 Mar 2019 23:19:01 +0000 (00:19 +0100)]
ref #8162 adapt cdmlip-app to new term package structure

5 years agoImport terms as Features instead of modifiers
Patrick Plitzner [Wed, 20 Feb 2019 13:42:52 +0000 (14:42 +0100)]
Import terms as Features instead of modifiers

 - Add idInSource, idInVocabulary

5 years agoImport plant glossary categories as modifier terms
Patrick Plitzner [Wed, 20 Feb 2019 08:40:08 +0000 (09:40 +0100)]
Import plant glossary categories as modifier terms

5 years agoref #7420 last changes to Phycobank higher classification import
Andreas Müller [Tue, 19 Feb 2019 15:01:18 +0000 (16:01 +0100)]
ref #7420 last changes to Phycobank higher classification import

5 years agoImplement Prometheus properties import
Patrick Plitzner [Mon, 18 Feb 2019 14:55:51 +0000 (15:55 +0100)]
Implement Prometheus properties import

5 years agoupdate pom versions in appimport
Andreas Müller [Thu, 14 Feb 2019 13:37:38 +0000 (14:37 +0100)]
update pom versions in appimport

5 years agominor
Andreas Müller [Thu, 14 Feb 2019 13:30:13 +0000 (14:30 +0100)]
minor

5 years agolatest changes to Greece image import
Andreas Müller [Thu, 14 Feb 2019 13:29:47 +0000 (14:29 +0100)]
latest changes to Greece image import

5 years agoref #1444 ref #7976 some changes to ERMS import
Andreas Müller [Thu, 14 Feb 2019 13:28:45 +0000 (14:28 +0100)]
ref #1444 ref #7976 some changes to ERMS import

5 years agoAdd additivity_ontology to plant glossary and KEW import
Patrick Plitzner [Tue, 29 Jan 2019 15:47:48 +0000 (16:47 +0100)]
Add additivity_ontology to plant glossary and KEW import

5 years agoOnly add example annotation when it exists
Patrick Plitzner [Tue, 29 Jan 2019 14:49:40 +0000 (15:49 +0100)]
Only add example annotation when it exists

5 years agoAdd id in vocabulary and source to terms
Patrick Plitzner [Tue, 29 Jan 2019 14:36:49 +0000 (15:36 +0100)]
Add id in vocabulary and source to terms

5 years agoImplement Kew Plant Glossary CSV import
Patrick Plitzner [Fri, 25 Jan 2019 14:54:29 +0000 (15:54 +0100)]
Implement Kew Plant Glossary CSV import

5 years agoImport categories and states of FloraTerms (PlantGlossary)
Patrick Plitzner [Fri, 18 Jan 2019 12:22:52 +0000 (13:22 +0100)]
Import categories and states of FloraTerms (PlantGlossary)

5 years agocleanup some ERMS imports
Andreas Müller [Thu, 17 Jan 2019 12:40:17 +0000 (13:40 +0100)]
cleanup some ERMS imports

5 years agocleanup ERMS validators
Andreas Müller [Thu, 17 Jan 2019 12:35:47 +0000 (13:35 +0100)]
cleanup ERMS validators

5 years agoref #1444 further cleanup ERMS import
Andreas Müller [Wed, 9 Jan 2019 17:21:24 +0000 (18:21 +0100)]
ref #1444 further cleanup ERMS import

5 years agoref #1444 remove some files from ERMS import
Andreas Müller [Wed, 9 Jan 2019 17:16:54 +0000 (18:16 +0100)]
ref #1444 remove some files from ERMS import

5 years agofix compile after cleanup
Andreas Müller [Wed, 9 Jan 2019 13:42:14 +0000 (14:42 +0100)]
fix compile after cleanup

5 years agocleanup pesi merge code
Andreas Müller [Wed, 9 Jan 2019 11:14:27 +0000 (12:14 +0100)]
cleanup pesi merge code

5 years agoref #1444 cleanup erms import code
Andreas Müller [Wed, 9 Jan 2019 11:13:56 +0000 (12:13 +0100)]
ref #1444 cleanup erms import code

5 years agoref #1444 add new erms source
Andreas Müller [Wed, 9 Jan 2019 11:12:01 +0000 (12:12 +0100)]
ref #1444 add new erms source

5 years agoupdate version in pesi + eflora poms
Andreas Müller [Wed, 9 Jan 2019 09:53:56 +0000 (10:53 +0100)]
update version in pesi + eflora poms

5 years agominor typo
Andreas Müller [Tue, 8 Jan 2019 15:33:58 +0000 (16:33 +0100)]
minor typo

5 years agoAdd more source information to plant glossary import
Patrick Plitzner [Mon, 10 Dec 2018 08:12:06 +0000 (09:12 +0100)]
Add more source information to plant glossary import

5 years agoAdd more source information to plant glossary import
Patrick Plitzner [Mon, 10 Dec 2018 06:30:43 +0000 (07:30 +0100)]
Add more source information to plant glossary import

5 years agoE+M latest changes to taxon relations import
Andreas Müller [Fri, 7 Dec 2018 15:18:43 +0000 (16:18 +0100)]
E+M latest changes to taxon relations import

5 years agoHandle Willing, E as artist for media
Andreas Müller [Fri, 7 Dec 2018 15:18:02 +0000 (16:18 +0100)]
Handle Willing, E as artist for media

5 years agoE+M latest changes to name import (mostly for unparsed refdetail handling)
Andreas Müller [Fri, 7 Dec 2018 15:17:31 +0000 (16:17 +0100)]
E+M latest changes to name import (mostly for unparsed refdetail handling)

5 years agoE+M use uuids for Authors, Teams and references
Andreas Müller [Fri, 7 Dec 2018 15:16:57 +0000 (16:16 +0100)]
E+M use uuids for Authors, Teams and references

5 years agominor
Andreas Müller [Fri, 7 Dec 2018 15:16:22 +0000 (16:16 +0100)]
minor

5 years agoAdapt to coding convention
Patrick Plitzner [Fri, 7 Dec 2018 14:56:53 +0000 (15:56 +0100)]
Adapt to coding convention

5 years agoFix multiple vocabulary generation
Patrick Plitzner [Fri, 7 Dec 2018 14:13:41 +0000 (15:13 +0100)]
Fix multiple vocabulary generation

5 years agoFix db connection
Patrick Plitzner [Fri, 7 Dec 2018 14:01:31 +0000 (15:01 +0100)]
Fix db connection

5 years agoAdd plant glossary import
Patrick Plitzner [Fri, 7 Dec 2018 13:26:58 +0000 (14:26 +0100)]
Add plant glossary import

5 years agoAdapt palm import to new match strategy handling
Andreas Müller [Thu, 29 Nov 2018 12:40:33 +0000 (13:40 +0100)]
Adapt palm import to new match strategy handling

5 years agominor chanes to PhycobankHigherClassificationActivator
Andreas Müller [Thu, 29 Nov 2018 12:35:44 +0000 (13:35 +0100)]
minor chanes to PhycobankHigherClassificationActivator

5 years agominor changes to Greece image import Activator
Andreas Müller [Thu, 29 Nov 2018 12:34:21 +0000 (13:34 +0100)]
minor changes to Greece image import Activator

5 years agoref #7669 improve Willing import
Andreas Müller [Thu, 29 Nov 2018 12:33:52 +0000 (13:33 +0100)]
ref #7669 improve Willing import

5 years agoref #3979 implement CdmPreferences for E+M Activator and some other changes for Activator
Andreas Müller [Thu, 29 Nov 2018 12:30:39 +0000 (13:30 +0100)]
ref #3979 implement CdmPreferences for E+M Activator and some other changes for Activator

5 years agoref #7921 Caucasus area import for E+M
Andreas Müller [Thu, 29 Nov 2018 12:25:18 +0000 (13:25 +0100)]
ref #7921 Caucasus area import for E+M

5 years agoimprove reference import for E+M (edition and volume handling)
Andreas Müller [Thu, 8 Nov 2018 11:33:26 +0000 (12:33 +0100)]
improve reference import for E+M (edition and volume handling)

5 years agoref #7894 import source numbers for E+M
Andreas Müller [Thu, 8 Nov 2018 11:32:44 +0000 (12:32 +0100)]
ref #7894 import source numbers for E+M

5 years agoref #7420 latest changes to PhycobankActivator
Andreas Müller [Tue, 16 Oct 2018 15:45:45 +0000 (17:45 +0200)]
ref #7420  latest changes to PhycobankActivator

5 years agoref #7823 implement user.person deduplication
Andreas Müller [Sun, 14 Oct 2018 12:56:28 +0000 (14:56 +0200)]
ref #7823  implement user.person deduplication

5 years agoref #7799 deduplicate and parse authorteams
Andreas Müller [Sun, 14 Oct 2018 12:53:09 +0000 (14:53 +0200)]
ref #7799 deduplicate and parse authorteams

5 years agoref #7801 and ref #3787 deduplicate reference.authorstring and reference itself
Andreas Müller [Sun, 14 Oct 2018 12:52:09 +0000 (14:52 +0200)]
ref #7801 and ref #3787 deduplicate reference.authorstring and reference itself

5 years agoinclude filtered authors in E+M import
Andreas Müller [Fri, 12 Oct 2018 07:25:04 +0000 (09:25 +0200)]
include filtered authors in E+M import

5 years ago#7799 reduce duplicated sources
Andreas Müller [Fri, 12 Oct 2018 07:23:30 +0000 (09:23 +0200)]
#7799 reduce duplicated sources

5 years agoimprove performance for author loading in E+M
Andreas Müller [Fri, 12 Oct 2018 07:19:30 +0000 (09:19 +0200)]
improve performance for author loading in E+M

5 years agoref #7796 remove ILDIS Bibliographie NameFacts from E+M import
Andreas Müller [Fri, 12 Oct 2018 07:04:20 +0000 (09:04 +0200)]
ref #7796 remove ILDIS Bibliographie NameFacts from E+M import

5 years agocleanup
Andreas Müller [Wed, 10 Oct 2018 10:54:09 +0000 (12:54 +0200)]
cleanup

5 years agoref #7799 improve performance of authorteam loading
Andreas Müller [Wed, 10 Oct 2018 10:53:51 +0000 (12:53 +0200)]
ref #7799 improve performance of authorteam loading

5 years agoref #7799 and others reinstall null check
Andreas Müller [Wed, 10 Oct 2018 10:52:59 +0000 (12:52 +0200)]
ref #7799 and others reinstall null check

5 years agoadd euromed production to activator
Andreas Müller [Wed, 10 Oct 2018 10:52:10 +0000 (12:52 +0200)]
add euromed production to activator

5 years agoref #7798 implement and improve occurrence.nameUsedInSource import for freetext and...
Andreas Müller [Wed, 10 Oct 2018 10:51:21 +0000 (12:51 +0200)]
ref #7798 implement and improve occurrence.nameUsedInSource import for freetext and referenced names

5 years agosplit occurrence and occurrence source import
Andreas Müller [Wed, 10 Oct 2018 10:48:20 +0000 (12:48 +0200)]
split occurrence and occurrence source import

5 years agoref #7800 parse preliminary RefDetails (first start)
Andreas Müller [Wed, 10 Oct 2018 10:45:41 +0000 (12:45 +0200)]
ref #7800 parse preliminary RefDetails  (first start)

5 years agoref #7799 implement author parsing for AuthorTeam and Reference.RefAuthorString
Andreas Müller [Wed, 10 Oct 2018 10:38:45 +0000 (12:38 +0200)]
ref #7799 implement author parsing for AuthorTeam and Reference.RefAuthorString