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latest changes to AlgaTerra import
[cdmlib-apps.git] / .gitattributes
diff --git a/.gitattributes b/.gitattributes
index f765c490c7aaa0f030381c4b7224fdd6998075fe..984d6fd0955cc6dbddaafb5592005de0fb660a32 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -1,4 +1,6 @@
 * text=auto !eol
+/LICENSE.TXT -text
+/README.TXT -text
 XperCdmIntegration/pom.xml -text
 XperCdmIntegration/src/main/java/eu/etaxonomy/cdm/io/xper/BaseCdm.java -text
 XperCdmIntegration/src/main/java/eu/etaxonomy/cdm/io/xper/CdmXperAdapter.java -text
@@ -16,6 +18,7 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/AlgaTerraActivat
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/BerlinModelDestinations.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/BerlinModelSources.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/CampanulaceaeActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/EuroMedActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/IldisActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/MTMooseActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/MTStandardlisteActivator.java -text
@@ -31,6 +34,7 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/common/CdmImportSources.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/common/ImportUtils.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/common/TestActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/cyprus/CyprusActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/cyprus/CyprusAltitudeActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/cyprus/CyprusSpecimenActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/dwca/DwcaExportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/dwca/DwcaImportActivator.java -text
@@ -39,6 +43,8 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/excelImport/taxa/NormalExplicitAct
 app-import/src/main/java/eu/etaxonomy/cdm/app/excelImport/taxa/UseSummaryActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/exel/NormalExplicitTestActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/globis/GlobisActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/i4life/col/ColDwcaExportActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/i4life/col/ColDwcaImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/images/AbstractImageImporter.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/images/ImageImportConfigurator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/images/ImageImportState.java -text
@@ -46,6 +52,9 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/jaxb/CdmDiffActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/jaxb/JaxbExportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/jaxb/JaxbImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/pilotOutputHtml/SimpleDescriptionOutput.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/proibiosphere/SpecimenImportActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/proibiosphere/SynthesysCacheActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/proibiosphere/TaxonXImportLauncher.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/redlist/RoteListeDbChecklistActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/references/EndNoteImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/AnthuriumActivator.java -text
@@ -121,6 +130,61 @@ app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/validation/AlgaTerraDnaIm
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/validation/AlgaTerraMorphologyImportValidator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/validation/AlgaTerraSpecimenImportValidator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/validation/AlgaTerraTypeImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelAuthorImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelAuthorTeamImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelCommonNamesImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelFactsImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelImportBase.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelImportConfigurator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelImportState.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelNameFactsImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelNameStatusImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelOccurrenceImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelOccurrenceSourceImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelRefDetailImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelReferenceImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelTaxonImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelTaxonNameImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelTaxonNameRelationImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelTaxonRelationImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelTypesImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelUserImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelWebMarkerCategoryImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelWebMarkerImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelAuthorImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelAuthorTeamImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelCommonNamesImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelFactsImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelGeneralImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelNameFactsImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelNameStatusImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelOccurrenceImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelOccurrenceSourceImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelRefDetailImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelReferenceImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelTaxonImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelTaxonNameImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelTaxonNameRelationImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelTaxonRelationImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelTypesImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelUserImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelWebMarkerCategoryImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelWebMarkerImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelAuthorExport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelAuthorTeamExport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelClassificationExport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelExportBase.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelExportConfigurator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelExportState.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelFactExport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelNameRelationExport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelReferenceExport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelTaxonExport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelTaxonNameExport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelTaxonRelationExport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/mapper/FactCategoryMapper.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/mapper/RefDetailMapper.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/mapper/TeamOrPersonMapper.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/caryo/CaryoImportConfigurator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/caryo/CaryoImportState.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/caryo/CaryoTaxonImport.java -text
@@ -133,13 +197,14 @@ app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusImportState.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusRow.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusTransformer.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusUserImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisAuthorImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisCommonNameImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisCurrentSpeciesImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisImageImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisImportBase.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisImportConfigurator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisImportState.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisReferenceImport.java -text
-app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisReferenceImport_Mapping_OLD.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisSpecTaxImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisTransformer.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/validation/GlobisCurrentSpeciesImportValidator.java -text
@@ -212,10 +277,12 @@ cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/CentralAfricaChecklistActiv
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/CentralAfricaEricaceaeActivator.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/CentralAfricaFernsActivator.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/CentralAfricaFernsFdacImportActivator.java -text
+cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/EfloraActivatorBase.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/EfloraSources.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/FloraGuianasActivator.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/FloraMalesianaActivator.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/FloraMalesianaActivator_OLD.java -text
+cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/FloraMalesianaProspectiveTester.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/FloreGabonActivator.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/testUpdate/EricaceaeTestUpdateActivator.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/io/eflora/EfloraImportBase.java -text
@@ -252,13 +319,11 @@ cdm-eflora/src/main/java/eu/etaxonomy/cdm/io/eflora/floraMalesiana/FloraMalesian
 cdm-pesi/LICENSE.TXT -text
 cdm-pesi/README.TXT -text
 cdm-pesi/pom.xml -text
-cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/common/BerlinModelSources.java -text
 cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/common/CdmDestinations.java -text
 cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/common/ImportUtils.java -text
 cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/common/TestDatabase.java -text
 cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/common/TreeCreator.java -text
 cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/pesi/ErmsActivator.java -text
-cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/pesi/EuroMedActivator.java -text
 cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/pesi/FaunaEuropaeaActivator.java -text
 cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/pesi/IndexFungorumActivator.java -text
 cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/pesi/PesiDestinations.java -text
@@ -349,3 +414,5 @@ cdm-pesi/src/main/resources/log4j.properties -text
 cdm-pesi/src/test/java/eu/etaxonomy/cdm/io/common/TestConnection.java -text
 cdm-pesi/src/test/java/eu/etaxonomy/cdm/io/erms/ermsErrors.txt -text
 cdm-pesi/src/test/resources/sql/Check_Import_Master.sql -text
+cdmapps-parent/pom.xml -text
+/pom.xml -text