import java.util.Map;
import java.util.UUID;
-import org.apache.commons.lang.StringUtils;
+import org.apache.commons.lang3.StringUtils;
import org.apache.logging.log4j.LogManager;
import org.apache.logging.log4j.Logger;
import org.springframework.stereotype.Component;
@Override
public void doInvoke(BerlinModelImportState state) {
- TermVocabulary<?> voc = getVocabularyService().find(BerlinModelTransformer.uuidVocEuroMedAreas);
- if (voc == null){
- try {
- createEuroMedAreas(state);
- createCaucasusAreas(state);
- } catch (SQLException e) {
- logger.warn("Exception when creating areas: " + e.getMessage());
- e.printStackTrace();
+ if (state.getConfig().isEuroMed()) {
+ TermVocabulary<?> voc = getVocabularyService().find(BerlinModelTransformer.uuidVocEuroMedAreas);
+ if (voc == null){
+ try {
+ createEuroMedAreas(state);
+ createCaucasusAreas(state);
+ } catch (SQLException e) {
+ logger.warn("Exception when creating areas: " + e.getMessage());
+ e.printStackTrace();
+ }
+ }
+ }else if (state.getConfig().isMcl()) {
+ TermVocabulary<?> voc = getVocabularyService().find(BerlinModelTransformer.uuidVocMclAreas);
+ if (voc == null){
+ createMclAreas(state);
}
}
return;
}
+ private TermVocabulary<NamedArea> createMclAreas(BerlinModelImportState state) {
+ logger.warn("Start creating MCL areas");
+
+ Reference sourceReference = state.getConfig().getSourceReference();
+
+ TransactionStatus txStatus = this.startTransaction();
+ sourceReference = getSourceReference(sourceReference);
+
+ OrderedTermVocabulary<NamedAreaLevel> mclAreaLevelVoc = makeEmptyMclAreaLevelVocabulary();
+ NamedAreaLevel areaLevelTop = getNamedAreaLevel(state, BerlinModelTransformer.uuidMclAreaLevelTop, "MCL top area level",
+ "MCL top area level. This level is only to be used for the area representing the complete MCL area", "mcl top", mclAreaLevelVoc);
+ NamedAreaLevel areaLevelMclMain = getNamedAreaLevel(state, BerlinModelTransformer.uuidMclAreaLevelFirst,
+ "MCL main area level", "MCL main area level", "mcl main", mclAreaLevelVoc);
+
+ OrderedTermVocabulary<NamedArea> mclAreasVoc = makeEmptyMclVocabulary();
+ NamedArea topArea = createMclArea(state, mclAreasVoc, null, areaLevelTop, "MCL", "MCL Area", "f0500f01-0a59-4a6b-83cf-4070182f7266");
+
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "AE", "East Aegean Islands", "e2367915-828b-4151-a3af-1a278abf1cd5");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Ag", "Algeria", "9dea2928-65fc-4999-8a5d-f63552553f9f");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Al", "Albania", "53e87d91-f5a8-434b-86c9-268750c3473b");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "An", "Asiatic Turkey", "96394d80-85b7-4b5d-940e-28772cb8fe46");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Bl", "Balearic Islands", "b9259337-c216-44b2-be26-337e1beebf5f");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Bu", "Bulgaria", "bb85aa3f-18cb-4961-866e-8bdedaf0c41b");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Co", "Corsica", "bcc5a02c-b37f-4639-9f50-e5623da46c95");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Cr", "Crete and Karpathos", "0773529f-e230-4397-8ba5-cd12d5af4172");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Cy", "Cyprus", "3b502256-4db5-47be-96da-c20341f7984e");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Eg", "Egypt", "9564126a-e24c-4ca1-a229-dd5c084dd543");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Ga", "France", "1a0b6e9d-9568-434f-8346-f33cd31b0c5f");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Gr", "Greece", "4a9a0f92-eb51-428a-b82f-96ee7ed77c60");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Hs", "Spain", "29f6ac94-2573-4122-87c7-165710037ff6");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "IJ", "Israel and Jordan", "abaa10ea-7da4-4940-81e3-6a6023b0d6b5");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "It", "Italy", "7003c0d4-ffab-4ee6-888d-47fc483fa8bd");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Ju", "Jugoslavia", "6409b4b8-2b3d-440c-b22c-ef98ed3257f3");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Li", "Libya", "a5418d46-5f3c-4964-8b12-19509bb313e1");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "LS", "Lebanon and Syria", "023f8dba-40f5-4d4e-b2ca-4e3004a25d1c");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Lu", "Portugal", "6b5018ed-d637-4dd2-a08e-e0d2f7633688");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Ma", "Morocco", "b9b85f84-6e3e-4f6c-b3bc-2f42d17bf077");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Me", "Malta", "6394ee61-999c-473e-88ed-aad9259ffa81");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "RK", "Crimea", "60ea0344-0639-451d-81fd-33263014f30f");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Sa", "Sardinia", "c3a7d579-998d-472b-a238-26d893ee03cb");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Si", "Sicily", "5187232e-38d3-4bec-9094-2f90abde78b8");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Sn", "Sinai", "54a53738-2e04-433e-9657-dd1fac45094e");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Tn", "Tunisia", "46d2df14-0b45-4413-bbf0-022d769cb479");
+ createMclArea(state, mclAreasVoc, topArea, areaLevelMclMain, "Tu", "Turkey-in-Europe", "aa93af77-033f-4096-a4ca-468ba07c64d9");
+
+ getVocabularyService().saveOrUpdate(mclAreasVoc);
+ try {
+ commitTransaction(txStatus);
+ } catch (Exception e) {
+ e.printStackTrace();
+ logger.error("An exception occurred when trying to commit MCL Areas");
+ }
+ logger.warn("Created MCL areas");
+
+ return mclAreasVoc;
+ }
+
+ private NamedArea createMclArea(BerlinModelImportState state, OrderedTermVocabulary<NamedArea> mclAreasVoc, NamedArea topArea,
+ NamedAreaLevel areaLevel, String abbrev, String label, String uuidStr) {
+ NamedArea namedArea = makeSingleMclArea(state, mclAreasVoc, topArea, areaLevel, UUID.fromString(uuidStr), label, abbrev);
+ state.putNamedArea(namedArea);
+ return namedArea;
+ }
+
+ private NamedArea makeSingleMclArea(@SuppressWarnings("unused") BerlinModelImportState state, OrderedTermVocabulary<NamedArea> voc,
+ NamedArea top, NamedAreaLevel areaLevel, UUID uuid, String label, String labelAbbrev) {
+
+ NamedArea namedArea = NamedArea.NewInstance(label, label, labelAbbrev);
+ namedArea.setUuid(uuid);
+
+ namedArea.setPartOf(top);
+ namedArea.setLevel(areaLevel);
+ namedArea.setIdInVocabulary(labelAbbrev);
+ namedArea.setSymbol(labelAbbrev);
+ namedArea.setSymbol2(labelAbbrev);
+
+ String geoAbbrev = labelAbbrev;
+ if ("An".equalsIgnoreCase(geoAbbrev)) {
+ geoAbbrev = "Tu(A)";
+ } else if ("Me".equalsIgnoreCase(geoAbbrev)) {
+ geoAbbrev = "Si(M)";
+ } else if ("RK".equalsIgnoreCase(geoAbbrev)) {
+ geoAbbrev = "Cm";
+ } else if ("Si".equalsIgnoreCase(geoAbbrev)) {
+ geoAbbrev = "Si(S)";
+ } else if ("Tu".equalsIgnoreCase(geoAbbrev)) {
+ geoAbbrev = "Tu(E)";
+ }
+
+ String geoMapping = "<?xml version=\"1.0\" ?><mapService xmlns=\"http://www.etaxonomy.eu/cdm\" type=\"editMapService\">"
+ + "<area><layer>euromed_2013</layer><field>EMAREA</field>"
+ + "<value>" + geoAbbrev + "</value></area></mapService>";
+ Annotation geoServiceMapping = Annotation.NewInstance(geoMapping, AnnotationType.TECHNICAL(), Language.UNKNOWN_LANGUAGE());
+ namedArea.addAnnotation(geoServiceMapping);
+
+ voc.addTerm(namedArea);
+ return namedArea;
+ }
+
private TermVocabulary<NamedArea> createEuroMedAreas(BerlinModelImportState state) throws SQLException {
logger.warn("Start creating E+M areas");
NamedAreaLevel areaLevelEm1 = getNamedAreaLevel(state, BerlinModelTransformer.uuidEuroMedAreaLevelFirst, "Euro+Med 1. area level", "Euro+Med 1. area level", "e+m 1.", null);
NamedAreaLevel areaLevelEm2 = getNamedAreaLevel(state, BerlinModelTransformer.uuidEuroMedAreaLevelSecond, "Euro+Med 2. area level", "Euro+Med 2. area level", "Euro+Med 1. area level", null);
-
String sql = "SELECT * , CASE WHEN EMCode = 'EM' THEN 'a' ELSE 'b' END as isEM " +
" FROM emArea " +
" WHERE areaId not IN (1, 14, 20, 21, 33, 646, 647, 653, 654, 1718) " +
return euroMedAreasVoc;
}
- /**
- * @param areaLevelEm2
- * @param euroMedAreas2
- */
private void emAreaFinetuning(TermVocabulary<NamedArea> euroMedAreas, NamedAreaLevel areaLevelEm2) {
//CZ
NamedArea oldArea = euroMedAreas.getTermByIdInvocabulary("Cz");
try {
- MarkerType hiddenAreaMarkerType = getMarkerType(state, BerlinModelTransformer.uuidHiddenArea,
+ MarkerType fallbackAreaMarkerType = getMarkerType(state, BerlinModelTransformer.uuidHiddenArea,
"Hidden Area","Used to hide distributions for the named areas in publications", null, getEuroMedMarkerTypeVoc(state));
//Add hidden area marker to Rs(C) and Rs(N)
- hideArea(euroMedAreasVoc, hiddenAreaMarkerType, BerlinModelTransformer.uuidRs);
- hideArea(euroMedAreasVoc, hiddenAreaMarkerType, BerlinModelTransformer.uuidRs_B);
- hideArea(euroMedAreasVoc, hiddenAreaMarkerType, BerlinModelTransformer.uuidRs_C);
- hideArea(euroMedAreasVoc, hiddenAreaMarkerType, BerlinModelTransformer.uuidRs_E);
- hideArea(euroMedAreasVoc, hiddenAreaMarkerType, BerlinModelTransformer.uuidRs_N);
- hideArea(euroMedAreasVoc, hiddenAreaMarkerType, BerlinModelTransformer.uuidRs_K);
- hideArea(euroMedAreasVoc, hiddenAreaMarkerType, BerlinModelTransformer.uuidRs_W);
+ hideArea(euroMedAreasVoc, fallbackAreaMarkerType, BerlinModelTransformer.uuidRs);
+ hideArea(euroMedAreasVoc, fallbackAreaMarkerType, BerlinModelTransformer.uuidRs_B);
+ hideArea(euroMedAreasVoc, fallbackAreaMarkerType, BerlinModelTransformer.uuidRs_C);
+ hideArea(euroMedAreasVoc, fallbackAreaMarkerType, BerlinModelTransformer.uuidRs_E);
+ hideArea(euroMedAreasVoc, fallbackAreaMarkerType, BerlinModelTransformer.uuidRs_N);
+ hideArea(euroMedAreasVoc, fallbackAreaMarkerType, BerlinModelTransformer.uuidRs_K);
+ hideArea(euroMedAreasVoc, fallbackAreaMarkerType, BerlinModelTransformer.uuidRs_W);
} catch (Exception e) {
e.printStackTrace();
logger.error("Exception in markAreasAsHidden: " + e.getMessage());
}
- private void hideArea(TermVocabulary<NamedArea> euroMedAreasVoc, MarkerType hiddenAreaMarkerType, UUID areaUuid) {
+ private void hideArea(TermVocabulary<NamedArea> euroMedAreasVoc, MarkerType fallbackAreaMarkerType, UUID areaUuid) {
for (NamedArea namedArea : euroMedAreasVoc.getTerms()){
if (namedArea.getUuid().equals(areaUuid)){
- namedArea.addMarker(Marker.NewInstance(hiddenAreaMarkerType, true));
+ namedArea.addMarker(Marker.NewInstance(fallbackAreaMarkerType, true));
return;
}
}
}
- /**
- * @param oldArea
- * @param namedArea
- * @param areaLevelEm2
- */
private void makeSubterm(NamedArea oldArea, NamedArea namedArea, NamedAreaLevel areaLevelEm2) {
namedArea.setLevel(areaLevelEm2);
namedArea.setPartOf(oldArea);
}
-
- /**
- * @param eurMarkerType
- * @param euroMedAreaMarkerType
- * @param isoCodeExtType
- * @param tdwgCodeExtType
- * @param mclCodeExtType
- * @param rs
- * @param areaLevelEm2
- * @param areaLevelEm1
- * @param areaLevelTop
- * @throws SQLException
- */
private NamedArea makeSingleEuroMedArea(ResultSet rs, MarkerType eurMarkerType,
MarkerType euroMedAreaMarkerType, ExtensionType isoCodeExtType,
ExtensionType tdwgCodeExtType, ExtensionType mclCodeExtType,
String mclCode = nullSafeTrim(rs.getString("MCLCode"));
String geoSearch = nullSafeTrim(rs.getString("NameForGeoSearch"));
-
if (isBlank(emCode)){
emCode = unit;
}
}
}
-
//code
area.setIdInVocabulary(emCode);
//notes
}
}
- /**
- *
- */
private OrderedTermVocabulary<NamedArea> makeEmptyEuroMedVocabulary() {
TermType type = TermType.NamedArea;
String description = "Euro+Med area vocabulary";
return result;
}
+ private OrderedTermVocabulary<NamedArea> makeEmptyMclVocabulary() {
+ TermType type = TermType.NamedArea;
+ String description = "MCL area vocabulary";
+ String label = "MCL Areas";
+ String abbrev = null;
+ URI termSourceUri = null;
+ OrderedTermVocabulary<NamedArea> result = OrderedTermVocabulary.NewOrderedInstance(type, null, description, label, abbrev, termSourceUri);
+
+ result.setUuid(BerlinModelTransformer.uuidVocMclAreas);
+ getVocabularyService().save(result);
+ return result;
+ }
+
+ private OrderedTermVocabulary<NamedAreaLevel> makeEmptyMclAreaLevelVocabulary() {
+ TermType type = TermType.NamedAreaLevel;
+ String description = "MCL area level vocabulary";
+ String label = "MCL Area Levels";
+ String abbrev = null;
+ URI termSourceUri = null;
+ OrderedTermVocabulary<NamedAreaLevel> result = OrderedTermVocabulary.NewOrderedInstance(type, null, description, label, abbrev, termSourceUri);
+
+ result.setUuid(UUID.randomUUID());
+ getVocabularyService().save(result);
+ return result;
+ }
- /**
- * @param state
- */
private void createCaucasusAreas(BerlinModelImportState state) {
OrderedTermVocabulary<NamedArea> voc = makeEmptyCaucasusVocabulary(state);
NamedArea last = null;
makeSingleArea(state, voc, last, BerlinModelTransformer.uuidCauc12, "Talysch","T","12","");
}
- /**
- * @param state
- * @param voc
- * @param uuidCauc1
- * @param string
- * @param string2
- * @param string3
- * @param string4
- * @return
- */
private NamedArea makeSingleArea(BerlinModelImportState state, OrderedTermVocabulary<NamedArea> voc, NamedArea last,
UUID uuid, String label, String labelAbbrev,
String mainLevel, String subLevel) {
return namedArea;
}
- /**
- * @param state
- */
private OrderedTermVocabulary<NamedArea> makeEmptyCaucasusVocabulary(BerlinModelImportState state) {
TermType type = TermType.NamedArea;
String description = "E+M Caucasus area vocabulary";
BGBM BDI Projects / cdmlib-apps.git / blobdiff