import org.apache.log4j.Logger;
import eu.etaxonomy.cdm.api.application.CdmApplicationController;
-import eu.etaxonomy.cdm.common.AccountStore;
import eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor;
+import eu.etaxonomy.cdm.config.AccountStore;
import eu.etaxonomy.cdm.database.CdmDataSource;
import eu.etaxonomy.cdm.database.DbSchemaValidation;
import eu.etaxonomy.cdm.database.ICdmDataSource;
private static String testServer = "edit-test.bgbm.fu-berlin.de"; //preliminary
private static String[] integrationDatabases = new String[]{
- "cdm_integration_cichorieae",
- "cdm_integration_cyprus", "cdm_integration_diptera",
+ "cdm_integration_cichorieae",
+ "cdm_integration_cyprus",
+ "cdm_integration_diptera",
"cdm_integration_flora_malesiana",
- "cdm_integration_palmae","cdm_integration_reference"
+ "cdm_integration_palmae",
+ "cdm_integration_reference"
};
private static String[] testDatabases = new String[]{
- "cdm_Test_Caryophyllales", "cdm_bgbm_edit_usergroup",
- "cdm_campanulaceae", "cdm_campanulaceae_082014",
- "cdm_col","cdm_corvidae", "cdm_cyprus","cdm_edaphobase_test",
- "cdm_edit_algaterra", "cdm_edit_cichorieae",
+ "cdm_Test_Caryophyllales",
+ "cdm_additivity_test",
+ "cdm_bgbm_edit_usergroup",
+ "cdm_campanulaceae","cdm_caryo_nepenthes",
+ "cdm_caryo_spp","cdm_causcasus_workshop",
+ "cdm_corvidae", "cdm_cyprus","cdm_edaphobase_test",
+ "cdm_edit_algaterra", "cdm_edit_algaterra_","cdm_edit_cichorieae",
"cdm_edit_flora_central_africa", "cdm_edit_flora_malesiana",
"cdm_edit_globis", "cdm_edit_palmae",
"cdm_flora_cuba", "cdm_flora_guianas",
"cdm_flore_gabon",
- "cdm_iapt",
- "cdm_mt_moose", "cdm_mt_standardliste",
+ "cdm_mt_moose",
+ "cdm_mt_standardliste",
+// "cdm_pesi_all",
"cdm_pesi_erms", "cdm_pesi_euromed", "cdm_pesi_fauna_europaea",
"cdm_phycobank",
+ "cdm_production_additivity_ontology",
"cdm_proibiosphere_chenopodium_pilot",
"cdm_rem_conf_ak", "cdm_rem_conf_am", "cdm_rem_conf_kl", "cdm_rem_conf_pp",
- "cdm_rl_animalia","cdm_rl_mammalia", "cdm_rl_plantae",
- "cdm_salvador",
+ "cdm_rl_animalia","cdm_rl_german_sl","cdm_rl_mammalia", "cdm_rl_plantae",
+ "cdm_salvador","cdm_test1","cdm_test2",
"cdm_test_euromed",
"cdm_vibrant_index"
};
private static String[] testDatabasesOthers = new String[]{"cdm_caryo_amaranthaceae",
- "cdm_caryo_caryophyllales","cdm_flora_malesiana_prospective","cdm_pesi_all","cdm_salvador",
- };
+ "cdm_caryo_caryophyllales","cdm_flora_malesiana_prospective","cdm_pesi_all",
+ };
private static String[] productionDatabases = new String[]{
- "cdm_production_acantholimon","cdm_production_algaterra",
- "cdm_production_amaranthaceae","cdm_production_cactaceae",
- "cdm_production_campanulaceae","cdm_production_caryophyllales",
- "cdm_production_chenopodiaceae","cdm_production_cichorieae",
- "cdm_production_col",
- "cdm_production_corvidae","cdm_production_cyprus",
- "cdm_production_dianthus","cdm_production_diptera",
- "cdm_production_euromed",
- "cdm_production_flora_central_africa","cdm_production_flora_guianas",
- "cdm_production_flora_malesiana","cdm_production_flora_malesiana_prospective",
+ "cdm_production_col",
+ "cdm_production_algaterra",
+ "cdm_production_algaterranew",
+ "cdm_production_asteraceae",
+ "cdm_production_campanulaceae",
+ "cdm_production_caryo_amaranthaceae",
+ "cdm_production_caryo_nepenthaceae",
+ "cdm_production_caryophyllales",
+ "cdm_production_caryophyllales_spp",
+ "cdm_production_cichorieae",
+ "cdm_production_corvidae",
+ "cdm_production_cyprus",
+ "cdm_production_diptera",
+ "cdm_production_edaphobase",
+ "cdm_production_euromed",
+ "cdm_production_flora_bogota",
+ "cdm_production_flora_central_africa",
+ "cdm_production_flora_cuba",
+ "cdm_production_flora_greece",
+ "cdm_production_flora_guianas",
+ "cdm_production_flora_malesiana",
+ "cdm_production_flora_malesiana_clean",
+ "cdm_production_flora_malesiana_prospective",
"cdm_production_flore_gabon",
- "cdm_production_globis","cdm_production_nyctaginaceae",
- "cdm_production_palmae","cdm_production_piB_campylopus_pilot",
- "cdm_production_piB_eupolybothrus_pilot","cdm_production_piB_lactarius_pilot",
- "cdm_production_piB_loranthaceae","cdm_production_piB_nephrolepis_pilot",
- "cdm_production_piB_ants_pilot","cdm_production_piB_chenopodium_pilot",
+ "cdm_production_globis",
+ "cdm_production_myristicaceae",
+ "cdm_production_palmae",
+ "cdm_production_phycobank",
+ "cdm_production_piB_ants_pilot",
+ "cdm_production_piB_campylopus_pilot",
+ "cdm_production_piB_chenopodium_pilot",
+ "cdm_production_piB_eupolybothrus_pilot",
+ "cdm_production_piB_lactarius_pilot",
+ "cdm_production_piB_nephrolepis_pilot",
"cdm_production_piB_spiders_pilot",
- "cdm_production_polygonaceae",
- "cdm_production_rl_animalis", //not yet filled
- "cdm_production_rl_armeria_demo", "cdm_production_rl_lumbricidae",
- "cdm_production_rl_standardliste", "cdm_production_rl_moose",
- "cdm_production_tamaricaceae","cdm_production_vibrant_index"
- };
-
-
- static BgbmServer bgbmServer = BgbmServer.TEST;
-
+ "cdm_production_rl_animalia",
+ "cdm_production_rl_animalia_final",
+ "cdm_production_rl_armeria_demo",
+ "cdm_production_rl_german_sl",
+ "cdm_production_rl_lumbricidae",
+ "cdm_production_rl_mammalia",
+ "cdm_production_rl_moose",
+ "cdm_production_rl_plantae",
+ "cdm_production_rl_standardliste",
+ "cdm_production_rubiaceae_mexico",
+ "cdm_production_salvador",
+ "cdm_production_vibrant_index"
+ };
+ static BgbmServer bgbmServer = BgbmServer.TEST;
static String username = "edit";
-
-
- /**
- * @param args
- */
- public static void main(String[] args) {
- DbSchemaValidation schema = DbSchemaValidation.VALIDATE;
+ private static void updateToCurrentVersion() {
+ DbSchemaValidation schema = DbSchemaValidation.VALIDATE;
String server = bgbmServer.server;
for (String database : bgbmServer.databases){
- boolean result = true;
- logger.warn("Update: " + database + " ... ");
+ logger.warn("Update: " + database + " ... ");
ICdmDataSource dataSource = CdmDataSource.NewMySqlInstance(server, database, username, AccountStore.readOrStorePassword(server, database, username, null));
- try {
+ SchemaUpdateResult result = new SchemaUpdateResult();
+ try {
CdmUpdater updater = new CdmUpdater();
- result = updater.updateToCurrentVersion(dataSource, DefaultProgressMonitor.NewInstance());
+ System.out.println(database);
+ result = updater.updateToCurrentVersion(dataSource, DefaultProgressMonitor.NewInstance());
+ System.out.println(result.createReport());
CdmApplicationController appCtr = CdmIoApplicationController.NewInstance(dataSource,schema);
System.out.println(appCtr.getClassificationService().count(Classification.class));
} catch (Exception e) {
- result = false;
+ result.addException(e, e.getMessage());
e.printStackTrace();
}
- if(!result ){
+ if(!result.isSuccess() ){
logger.warn("Problem");
System.exit(1);
}
logger.warn("Update: " + database + " ... DONE ");
}
- System.exit(0);
- }
-
- private enum BgbmServer{
+ }
+
+ private static void singleUpdateStep(boolean startApp) {
+ DbSchemaValidation schema = DbSchemaValidation.VALIDATE;
+ String server = bgbmServer.server;
+ for (String database : bgbmServer.databases){
+ logger.warn("Update: " + database + " ... ");
+ ICdmDataSource dataSource = CdmDataSource.NewMySqlInstance(server, database, username, AccountStore.readOrStorePassword(server, database, username, null));
+ SchemaUpdateResult result = new SchemaUpdateResult();
+ try {
+ System.out.println(database);
+ //define step here !!!
+ SchemaUpdaterStepBase step = IndexRenamer.NewStringInstance(null, "TaxonName",
+ "taxonNameBaseNameCacheIndex", "taxonNameNameCacheIndex", "nameCache", 255);
+ SchemaUpdaterStepBase step2 = IndexRenamer.NewStringInstance(null, "TaxonName",
+ "taxonNameBaseTitleCacheIndex", "taxonNameTitleCacheIndex", "titleCache", 333);
+ dataSource.startTransaction();
+ step.invoke(dataSource, DefaultProgressMonitor.NewInstance(), CaseType.caseTypeOfDatasource(dataSource), result);
+ step2.invoke(dataSource, DefaultProgressMonitor.NewInstance(), CaseType.caseTypeOfDatasource(dataSource), result);
+ dataSource.commitTransaction();
+ System.out.println(result.createReport());
+ if (startApp){
+ CdmApplicationController appCtr = CdmIoApplicationController.NewInstance(dataSource,schema);
+ System.out.println(appCtr.getClassificationService().count(Classification.class));
+ }
+ } catch (Exception e) {
+ result.addException(e, e.getMessage());
+ e.printStackTrace();
+ }
+ if(!result.isSuccess() ){
+ logger.warn("Problem");
+ System.exit(1);
+ }
+
+ logger.warn("Update: " + database + " ... DONE ");
+ }
+
+ }
+
+ public static void main(String[] args) {
+ updateToCurrentVersion();
+// singleUpdateStep(false);
+ System.exit(0);
+ }
+
+ private enum BgbmServer{
INTEGRATION (integrationServer, integrationDatabases),
TEST(testServer,testDatabases),
PRODUCTION(productionServer,productionDatabases);
this.server = server;
this.databases = databases;
}
-
}
}
BGBM BDI Projects / cdmlib-apps.git / blobdiff