import org.apache.log4j.Logger;\r
\r
import eu.etaxonomy.cdm.io.berlinModel.BerlinModelTransformer;\r
+import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;\r
+import eu.etaxonomy.cdm.io.common.mapping.out.ExportTransformerBase;\r
+import eu.etaxonomy.cdm.io.common.mapping.out.IExportTransformer;\r
import eu.etaxonomy.cdm.io.pesi.erms.ErmsTransformer;\r
import eu.etaxonomy.cdm.model.common.CdmBase;\r
import eu.etaxonomy.cdm.model.common.Language;\r
import eu.etaxonomy.cdm.model.description.PresenceTerm;\r
import eu.etaxonomy.cdm.model.location.NamedArea;\r
import eu.etaxonomy.cdm.model.location.TdwgArea;\r
-import eu.etaxonomy.cdm.model.name.BacterialName;\r
-import eu.etaxonomy.cdm.model.name.BotanicalName;\r
+import eu.etaxonomy.cdm.model.location.WaterbodyOrCountry;\r
import eu.etaxonomy.cdm.model.name.NameRelationshipType;\r
import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;\r
import eu.etaxonomy.cdm.model.name.NomenclaturalCode;\r
import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;\r
import eu.etaxonomy.cdm.model.name.Rank;\r
-import eu.etaxonomy.cdm.model.name.TaxonNameBase;\r
-import eu.etaxonomy.cdm.model.name.ZoologicalName;\r
import eu.etaxonomy.cdm.model.occurrence.Fossil;\r
import eu.etaxonomy.cdm.model.reference.Reference;\r
import eu.etaxonomy.cdm.model.reference.ReferenceType;\r
* @date 16.02.2010\r
*\r
*/\r
-public final class PesiTransformer {\r
+public final class PesiTransformer extends ExportTransformerBase implements IExportTransformer{\r
+ \r
private static final Logger logger = Logger.getLogger(PesiTransformer.class);\r
\r
public static final String auctString = "auct.";\r
public static int IS_POTENTIAL_COMBINATION_FOR = 303;\r
\r
public static String STR_IS_BASIONYM_FOR = "is basionym for";\r
+ public static String STR_IS_BASIONYM_FOR_ZOOL = "is original combination for";\r
public static String STR_IS_LATER_HOMONYM_OF = "is later homonym of";\r
public static String STR_IS_REPLACED_SYNONYM_FOR = "is replaced synonym for";\r
public static String STR_IS_VALIDATION_OF = "is validation of";\r
public static String STR_IS_PRO_PARTE_SYNONYM_OF = "is pro parte synonym of";\r
public static String STR_IS_PARTIAL_SYNONYM_OF = "is partial synonym of";\r
public static String STR_IS_HETEROTYPIC_SYNONYM_OF = "is heterotypic synonym of";\r
+ public static String STR_IS_HETEROTYPIC_SYNONYM_OF_ZOOL = "is subjective synonym of";\r
public static String STR_IS_HOMOTYPIC_SYNONYM_OF = "is homotypic synonym of";\r
+ private static final String STR_IS_HOMOTYPIC_SYNONYM_OF_ZOOL = "is objective synonym of";\r
public static String STR_IS_PRO_PARTE_AND_HOMOTYPIC_SYNONYM_OF = "is pro parte and homotypic synonym of";\r
public static String STR_IS_PRO_PARTE_AND_HETEROTYPIC_SYNONYM_OF = "is pro parte and heterotypic synonym of";\r
public static String STR_IS_PARTIAL_AND_HOMOTYPIC_SYNONYM_OF = "is partial and homotypic synonym of";\r
public static int AREA_BALEAR_SEA = 196;\r
public static int AREA_TURKISH_EXCLUSIVE_ECONOMIC_ZONE = 197;\r
public static int AREA_DANISH_EXCLUSIVE_ECONOMIC_ZONE = 198;\r
+ public static int AREA_TRANSCAUCASUS = 199;\r
\r
\r
public static String STR_AREA_EAST_AEGEAN_ISLANDS = "East Aegean Islands";\r
public static String STR_AREA_BALEAR_SEA = "Balear Sea";\r
public static String STR_AREA_TURKISH_EXCLUSIVE_ECONOMIC_ZONE = "Turkish Exclusive Economic Zone";\r
public static String STR_AREA_DANISH_EXCLUSIVE_ECONOMIC_ZONE = "Danish Exclusive Economic Zone";\r
+ public static String STR_AREA_TRANSCAUCASUS = "Transcaucasus";\r
\r
\r
\r
*/\r
public static String presenceAbsenceTerm2OccurrenceStatusCache(PresenceAbsenceTermBase<?> term) {\r
String result = null;\r
- if (term.isInstanceOf(PresenceTerm.class)) {\r
+ if (term == null){\r
+ return null;\r
+ }else if (term.isInstanceOf(PresenceTerm.class)) {\r
PresenceTerm presenceTerm = CdmBase.deproxy(term, PresenceTerm.class);\r
if (presenceTerm.equals(PresenceTerm.PRESENT())) {\r
result = STR_STATUS_PRESENT;\r
*/\r
public static Integer presenceAbsenceTerm2OccurrenceStatusId(PresenceAbsenceTermBase<?> term) {\r
Integer result = null;\r
- if (term.isInstanceOf(PresenceTerm.class)) {\r
+ if (term == null){\r
+ return null;\r
+ }else if (term.isInstanceOf(PresenceTerm.class)) {\r
PresenceTerm presenceTerm = CdmBase.deproxy(term, PresenceTerm.class);\r
if (presenceTerm.equals(PresenceTerm.PRESENT())) {\r
result = STATUS_PRESENT;\r
* @return\r
*/\r
public static String area2AreaCache(NamedArea area) {\r
+ NamedArea namedArea = CdmBase.deproxy(area, NamedArea.class);\r
if (area == null) {\r
return null;\r
} else if (area.isInstanceOf(TdwgArea.class)) {\r
- NamedArea namedArea = CdmBase.deproxy(area, NamedArea.class);\r
-\r
+ \r
// TODO: Areas identified by the string "TODO" (for now) have to be identified correctly after additions have been made to the list of NamedArea's according to specific imports, i.e. euro+med\r
if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return STR_AREA_EAST_AEGEAN_ISLANDS; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("EAI")) { return STR_AREA_GREEK_EAST_AEGEAN_ISLANDS; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("BLT-LI")) { return STR_AREA_LITHUANIA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("POR")) { return STR_AREA_PORTUGUESE_MAINLAND; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("POR-OO")) { return STR_AREA_PORTUGUESE_MAINLAND; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("MDR")) { return STR_AREA_MADEIRA; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("MDR-OO")) { return STR_AREA_MADEIRA; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return STR_AREA_DESERTAS; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return STR_AREA_PORTO_SANTO; }\r
+ else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("MDR")) { return STR_AREA_MADEIRA_ARCHIPELAGO; }\r
+ else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("MDR-OO")) { return STR_AREA_MADEIRA_ARCHIPELAGO; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("YUG-MA")) { return STR_AREA_THE_FORMER_JUGOSLAV_REPUBLIC_OF_MAKEDONIJA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("UKR-MO")) { return STR_AREA_MOLDOVA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("NOR")) { return STR_AREA_NORWEGIAN_MAINLAND; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("RUS-OO")) { return STR_AREA_SOUTH_EUROPEAN_RUSSIA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("ROM")) { return STR_AREA_ROMANIA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("ROM-OO")) { return STR_AREA_ROMANIA; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return STR_AREA_FORMER_USSR; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return STR_AREA_RUSSIA_BALTIC; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("RUC")) { return STR_AREA_RUSSIA_CENTRAL; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return STR_AREA_RUSSIA_SOUTHEAST; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("RUN")) { return STR_AREA_RUSSIA_NORTHERN; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return STR_AREA_RUSSIA_SOUTHWEST; }\r
+ \r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("SAR")) { return STR_AREA_SARDEGNA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("SAR-OO")) { return STR_AREA_SARDEGNA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("SVA")) { return STR_AREA_SVALBARD_WITH_BJORNOYA_AND_JAN_MAYEN; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("SWE-OO")) { return STR_AREA_SWEDEN; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TUE")) { return STR_AREA_EUROPEAN_TURKEY; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TUE-OO")) { return STR_AREA_EUROPEAN_TURKEY; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return STR_AREA_UKRAINE_INCLUDING_CRIMEA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("KRY")) { return STR_AREA_CRIMEA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("KRY-OO")) { return STR_AREA_CRIMEA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("UKR-UK")) { return STR_AREA_UKRAINE; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("NEO")) { return STR_AREA_NEOTROPICAL_REGION; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("NRE")) { return STR_AREA_NEAR_EAST; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("ORR")) { return STR_AREA_ORIENTAL_REGION; }\r
+ else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TCS")) { return STR_AREA_TRANSCAUCASUS; }\r
+ \r
else if (namedArea.getUuid().equals(ErmsTransformer.uuidEuropeanMarineWaters)) { return STR_AREA_EUROPEAN_MARINE_WATERS; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("MES") ||\r
(namedArea.getUuid().equals(ErmsTransformer.uuidMediterraneanSea))) { return STR_AREA_MEDITERRANEAN_SEA; } // abbreviated label missing\r
else if (namedArea.getUuid().equals(ErmsTransformer.uuidBalearSea)) { return STR_AREA_BALEAR_SEA; }\r
else if (namedArea.getUuid().equals(ErmsTransformer.uuidTurkishExclusiveEconomicZone)) { return STR_AREA_TURKISH_EXCLUSIVE_ECONOMIC_ZONE; }\r
else if (namedArea.getUuid().equals(ErmsTransformer.uuidDanishExclusiveEconomicZone)) { return STR_AREA_DANISH_EXCLUSIVE_ECONOMIC_ZONE; }\r
+ else {\r
+ logger.error("Unknown NamedArea Area: " + area.getTitleCache());\r
+ return null; // Actually the export has to stop here because AreaFk's are not allowed to be NULL.\r
+ }\r
+ }else {\r
+ if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidMadeira))){ return STR_AREA_MADEIRA; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidDesertas))) { return STR_AREA_DESERTAS; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidPortoSanto))) { return STR_AREA_PORTO_SANTO; }\r
+ else if ((namedArea.equals(WaterbodyOrCountry.UKRAINE()))) { return STR_AREA_UKRAINE_INCLUDING_CRIMEA; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidRussiaBaltic))) { return STR_AREA_RUSSIA_BALTIC; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidRussiaSouthEast))) { return STR_AREA_RUSSIA_SOUTHEAST; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidRussiaSouthWest))) { return STR_AREA_RUSSIA_SOUTHWEST; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidUssr))) { return STR_AREA_FORMER_USSR; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidRussiaCentral))) { return STR_AREA_RUSSIA_CENTRAL; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidRussiaNorthern))) { return STR_AREA_RUSSIA_NORTHERN; }\r
+ \r
else {\r
logger.error("Unknown NamedArea Area: " + area.getTitleCache());\r
return null; // Actually the export has to stop here because AreaFk's are not allowed to be NULL.\r
}\r
}\r
- return null; // Actually the export has to stop here because AreaFk's are not allowed to be NULL.\r
- \r
+ }\r
+\r
+ @Override\r
+ public String getCacheByPresenceAbsenceTerm(PresenceAbsenceTermBase status) throws UndefinedTransformerMethodException {\r
+ return presenceAbsenceTerm2OccurrenceStatusCache(status);\r
+ }\r
+ \r
+ @Override\r
+ public Object getKeyByPresenceAbsenceTerm(PresenceAbsenceTermBase status) throws UndefinedTransformerMethodException {\r
+ return presenceAbsenceTerm2OccurrenceStatusId(status);\r
+ }\r
+ \r
+ \r
+ \r
+ @Override\r
+ public String getCacheByNamedArea(NamedArea area) throws UndefinedTransformerMethodException {\r
+ return area2AreaCache(area);\r
+ }\r
+ \r
+ \r
+ @Override\r
+ public Object getKeyByNamedArea(NamedArea area) throws UndefinedTransformerMethodException {\r
+ return area2AreaId(area);\r
}\r
\r
+ \r
/**\r
* Returns the AreaId for a given Area.\r
* @param area\r
* @return\r
*/\r
public static Integer area2AreaId(NamedArea area) {\r
+ NamedArea namedArea = CdmBase.deproxy(area, NamedArea.class);\r
+\r
if (area == null) {\r
return null;\r
} else if (area.isInstanceOf(TdwgArea.class)) {\r
- NamedArea namedArea = CdmBase.deproxy(area, NamedArea.class);\r
-\r
+ \r
// TODO: Areas identified by the string "TODO" (for now) have to be identified correctly after additions have been made to the list of NamedArea's according to specific imports, i.e. euro+med\r
if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return AREA_EAST_AEGEAN_ISLANDS; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("EAI")) { return AREA_GREEK_EAST_AEGEAN_ISLANDS; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("BLT-LI")) { return AREA_LITHUANIA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("POR")) { return AREA_PORTUGUESE_MAINLAND; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("POR-OO")) { return AREA_PORTUGUESE_MAINLAND; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("MDR")) { return AREA_MADEIRA; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("MDR-OO")) { return AREA_MADEIRA; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return AREA_DESERTAS; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return AREA_PORTO_SANTO; }\r
+ else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("MDR")) { return AREA_MADEIRA_ARCHIPELAGO; }\r
+ else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("MDR-OO")) { return AREA_MADEIRA_ARCHIPELAGO; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("YUG-MA")) { return AREA_THE_FORMER_JUGOSLAV_REPUBLIC_OF_MAKEDONIJA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("UKR-MO")) { return AREA_MOLDOVA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("NOR")) { return AREA_NORWEGIAN_MAINLAND; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("RUS-OO")) { return AREA_SOUTH_EUROPEAN_RUSSIA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("ROM")) { return AREA_ROMANIA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("ROM-OO")) { return AREA_ROMANIA; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return AREA_FORMER_USSR; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return AREA_RUSSIA_BALTIC; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("RUC")) { return AREA_RUSSIA_CENTRAL; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return AREA_RUSSIA_SOUTHEAST; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("RUN")) { return AREA_RUSSIA_NORTHERN; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return AREA_RUSSIA_SOUTHWEST; }\r
+ \r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("SAR")) { return AREA_SARDEGNA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("SAR-OO")) { return AREA_SARDEGNA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("SVA")) { return AREA_SVALBARD_WITH_BJORNOYA_AND_JAN_MAYEN; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("SWE-OO")) { return AREA_SWEDEN; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TUE")) { return AREA_EUROPEAN_TURKEY; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TUE-OO")) { return AREA_EUROPEAN_TURKEY; }\r
- else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TODO")) { return AREA_UKRAINE_INCLUDING_CRIMEA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("KRY")) { return AREA_CRIMEA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("KRY-OO")) { return AREA_CRIMEA; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("UKR-UK")) { return AREA_UKRAINE; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("NEO")) { return AREA_NEOTROPICAL_REGION; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("NRE")) { return AREA_NEAR_EAST; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("ORR")) { return AREA_ORIENTAL_REGION; }\r
+ else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("TCS")) { return AREA_TRANSCAUCASUS; }\r
+ \r
else if (namedArea.getUuid().equals(ErmsTransformer.uuidEuropeanMarineWaters)) { return AREA_EUROPEAN_MARINE_WATERS; }\r
else if ((namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("MES") ||\r
(namedArea.getUuid().equals(ErmsTransformer.uuidMediterraneanSea))) { return AREA_MEDITERRANEAN_SEA; } // abbreviated label missing\r
else if (namedArea.getUuid().equals(ErmsTransformer.uuidBalearSea)) { return AREA_BALEAR_SEA; }\r
else if (namedArea.getUuid().equals(ErmsTransformer.uuidTurkishExclusiveEconomicZone)) { return AREA_TURKISH_EXCLUSIVE_ECONOMIC_ZONE; }\r
else if (namedArea.getUuid().equals(ErmsTransformer.uuidDanishExclusiveEconomicZone)) { return AREA_DANISH_EXCLUSIVE_ECONOMIC_ZONE; }\r
+ else {\r
+ logger.error("Unknown TDWGArea: " + area.getTitleCache());\r
+ }\r
+ }else{ //Non TDWG\r
+ if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidMadeira))){ return AREA_MADEIRA; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidDesertas))) { return AREA_DESERTAS; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidPortoSanto))) { return AREA_PORTO_SANTO; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidRussiaBaltic))) { return AREA_RUSSIA_BALTIC; }\r
+ else if ((namedArea.equals(WaterbodyOrCountry.UKRAINE()))) { return AREA_UKRAINE_INCLUDING_CRIMEA; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidRussiaSouthEast))) { return AREA_RUSSIA_SOUTHEAST; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidRussiaSouthWest))) { return AREA_RUSSIA_SOUTHWEST; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidUssr))) { return AREA_FORMER_USSR; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidRussiaCentral))) { return AREA_RUSSIA_CENTRAL; }\r
+ else if ((namedArea.getUuid().equals(BerlinModelTransformer.uuidRussiaNorthern))) { return AREA_RUSSIA_NORTHERN; }\r
+ \r
else {\r
logger.error("Unknown NamedArea Area: " + area.getTitleCache());\r
}\r
+\r
}\r
return null;\r
\r
* @param feature\r
* @return\r
*/\r
- public static Integer textData2NodeCategoryFk(Feature feature) {\r
+ public static Integer feature2NodeCategoryFk(Feature feature) {\r
if (feature == null) {\r
return null;\r
}\r
return NoteCategory_Identification;\r
} else if (feature.getUuid().equals(ErmsTransformer.uuidSynonymy)) {\r
return NoteCategory_Synonymy;\r
-// } else if (feature.equals(Feature.CITATION())) {\r
-// return;\r
+ } else if (feature.equals(Feature.CITATION())) {\r
+ return null; //citations are handled differently\r
\r
// TODO: Unknown NodeCategories\r
// NoteCategory_general_distribution_euromed = 10;\r
// NoteCategory_Host = 283;\r
\r
}else{\r
- logger.warn("Unknown Feature: " + feature.getTitleCache());\r
+ logger.warn("Unhandled Feature: " + feature.getTitleCache());\r
return null;\r
}\r
}\r
}\r
return result;\r
}\r
-\r
- /**\r
- * Returns the NomenclaturalCode for a given TaxonNameBase.\r
- * @param taxonName\r
- * @return\r
- */\r
- public static NomenclaturalCode getNomenclaturalCode(TaxonNameBase taxonName) {\r
- NomenclaturalCode code = null;\r
- if (taxonName.isInstanceOf(ZoologicalName.class)) {\r
- code = NomenclaturalCode.ICZN;\r
- } else if (taxonName.isInstanceOf(BotanicalName.class)) {\r
- code = NomenclaturalCode.ICBN;\r
- } else if (taxonName.isInstanceOf(BacterialName.class)) {\r
- code = NomenclaturalCode.ICNB;\r
-// } else if (taxonName.isInstanceOf(NonViralName.class)) { // Biota\r
-// code = NomenclaturalCode.\r
- } else {\r
- logger.error("NomenclaturalCode could not be determined for this TaxonName: " + taxonName.getUuid() + " (" + taxonName.getTitleCache() + ")");\r
- logger.error("");\r
- }\r
- return code;\r
- }\r
\r
/**\r
* Returns the RankId for a Rank.\r
* @param relation\r
* @return\r
*/\r
- public static String taxonRelation2RelTaxonQualifierCache(RelationshipBase<?,?,?> relation){\r
- if (relation == null) {\r
- return null;\r
- }\r
- RelationshipTermBase<?> type = relation.getType();\r
- if (type.equals(TaxonRelationshipType.MISAPPLIED_NAME_FOR())) {\r
- return STR_IS_MISAPPLIED_NAME_FOR;\r
- } else if (type.equals(SynonymRelationshipType.SYNONYM_OF())) {\r
- return STR_IS_SYNONYM_OF;\r
- } else if (type.equals(SynonymRelationshipType.HOMOTYPIC_SYNONYM_OF())) {\r
- return STR_IS_HOMOTYPIC_SYNONYM_OF;\r
- } else if (type.equals(SynonymRelationshipType.HETEROTYPIC_SYNONYM_OF())) {\r
- return STR_IS_HETEROTYPIC_SYNONYM_OF;\r
- } else if (type.equals(SynonymRelationshipType.INFERRED_EPITHET_OF())) {\r
- return STR_IS_INFERRED_EPITHET_FOR;\r
- } else if (type.equals(SynonymRelationshipType.INFERRED_GENUS_OF())) {\r
- return STR_IS_INFERRED_GENUS_FOR;\r
- } else if (type.equals(SynonymRelationshipType.POTENTIAL_COMBINATION_OF())) {\r
- return STR_IS_POTENTIAL_COMBINATION_FOR;\r
- } else if (type.equals(NameRelationshipType.BASIONYM())) {\r
- return STR_IS_BASIONYM_FOR;\r
- } else if (type.equals(NameRelationshipType.LATER_HOMONYM())) {\r
- return STR_IS_LATER_HOMONYM_OF;\r
- } else if (type.equals(NameRelationshipType.REPLACED_SYNONYM())) {\r
- return STR_IS_REPLACED_SYNONYM_FOR;\r
- } else if (type.equals(NameRelationshipType.VALIDATED_BY_NAME())) {\r
- return STR_IS_VALIDATION_OF;\r
- } else if (type.equals(NameRelationshipType.LATER_VALIDATED_BY_NAME())) {\r
- return STR_IS_LATER_VALIDATION_OF;\r
- } else if (type.equals(NameRelationshipType.CONSERVED_AGAINST())) {\r
- return STR_IS_CONSERVED_AGAINST;\r
- } else if (type.equals(NameRelationshipType.TREATED_AS_LATER_HOMONYM())) {\r
- return STR_IS_TREATED_AS_LATER_HOMONYM_OF;\r
- } else if (type.equals(NameRelationshipType.ORTHOGRAPHIC_VARIANT())) {\r
- return STR_IS_ORTHOGRAPHIC_VARIANT_OF;\r
- } else if (type.equals(NameRelationshipType.ALTERNATIVE_NAME())) {\r
- return STR_IS_ALTERNATIVE_NAME_FOR;\r
- } else {\r
- logger.warn("No equivalent RelationshipType found in datawarehouse for: " + type.getTitleCache());\r
- }\r
- \r
- // The following have no equivalent attribute in CDM\r
-// IS_TYPE_OF\r
-// IS_CONSERVED_TYPE_OF\r
-// IS_REJECTED_TYPE_OF\r
-// IS_FIRST_PARENT_OF\r
-// IS_SECOND_PARENT_OF\r
-// IS_FEMALE_PARENT_OF\r
-// IS_MALE_PARENT_OF\r
-// IS_REJECTED_IN_FAVOUR_OF\r
-// HAS_SAME_TYPE_AS\r
-// IS_LECTOTYPE_OF\r
-// TYPE_NOT_DESIGNATED\r
-// IS_PRO_PARTE_SYNONYM_OF\r
-// IS_PARTIAL_SYNONYM_OF\r
-// IS_PRO_PARTE_AND_HOMOTYPIC_SYNONYM_OF\r
-// IS_PRO_PARTE_AND_HETEROTYPIC_SYNONYM_OF\r
-// IS_PARTIAL_AND_HOMOTYPIC_SYNONYM_OF\r
-// IS_PARTIAL_AND_HETEROTYPIC_SYNONYM_OF\r
-\r
- return null;\r
- }\r
- \r
- /**\r
- * Returns the RelTaxonQualifierCache for a given zoological taxonRelation.\r
- * @param relation\r
- * @return\r
- */\r
- public static String zoologicalTaxonRelation2RelTaxonQualifierCache(RelationshipBase<?,?,?> relation){\r
+ public static String taxonRelation2RelTaxonQualifierCache(RelationshipBase<?,?,?> relation, NomenclaturalCode code){\r
if (relation == null) {\r
return null;\r
}\r
} else if (type.equals(SynonymRelationshipType.SYNONYM_OF())) {\r
return STR_IS_SYNONYM_OF;\r
} else if (type.equals(SynonymRelationshipType.HOMOTYPIC_SYNONYM_OF())) {\r
- return "is objective synonym of";\r
+ if (code.equals(NomenclaturalCode.ICZN)){\r
+ return STR_IS_HOMOTYPIC_SYNONYM_OF_ZOOL;\r
+ }else{\r
+ return STR_IS_HOMOTYPIC_SYNONYM_OF;\r
+ }\r
} else if (type.equals(SynonymRelationshipType.HETEROTYPIC_SYNONYM_OF())) {\r
- return "is subjective synonym of";\r
+ if (code.equals(NomenclaturalCode.ICZN)){\r
+ return STR_IS_HETEROTYPIC_SYNONYM_OF_ZOOL;\r
+ }else{\r
+ return STR_IS_HETEROTYPIC_SYNONYM_OF;\r
+ }\r
} else if (type.equals(SynonymRelationshipType.INFERRED_EPITHET_OF())) {\r
return STR_IS_INFERRED_EPITHET_FOR;\r
} else if (type.equals(SynonymRelationshipType.INFERRED_GENUS_OF())) {\r
} else if (type.equals(SynonymRelationshipType.POTENTIAL_COMBINATION_OF())) {\r
return STR_IS_POTENTIAL_COMBINATION_FOR;\r
} else if (type.equals(NameRelationshipType.BASIONYM())) {\r
- return "is original combination for";\r
+ if (code.equals(NomenclaturalCode.ICZN)){\r
+ return STR_IS_BASIONYM_FOR_ZOOL;\r
+ }else{\r
+ return STR_IS_BASIONYM_FOR;\r
+ }\r
} else if (type.equals(NameRelationshipType.LATER_HOMONYM())) {\r
return STR_IS_LATER_HOMONYM_OF;\r
} else if (type.equals(NameRelationshipType.REPLACED_SYNONYM())) {\r
BGBM BDI Projects / cdmlib-apps.git / blobdiff