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cleanup
[cdmlib-apps.git] / .gitattributes
diff --git a/.gitattributes b/.gitattributes
index e2970bd2a4d34f82c5cd019db37d6db286678c04..0da7e539cdab96f1336bdf00a4878bba5a8c71df 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -1,4 +1,6 @@
 * text=auto !eol
+/LICENSE.TXT -text
+/README.TXT -text
 XperCdmIntegration/pom.xml -text
 XperCdmIntegration/src/main/java/eu/etaxonomy/cdm/io/xper/BaseCdm.java -text
 XperCdmIntegration/src/main/java/eu/etaxonomy/cdm/io/xper/CdmXperAdapter.java -text
@@ -25,6 +27,13 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/SalvadorExport.j
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/SourceBase.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/TreeCreator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/caryophyllales/CaryoActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/caryophyllales/CaryophyllalesCacheUpdater.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/caryophyllales/CaryophyllalesTcsXmlActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/caryophyllales/DeleteNonReferencedReferences.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/caryophyllales/TaxonExcelCaryophyllales.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/caryophyllales/TaxonExcelCaryophyllalesActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/caryophyllales/TcsSources.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/caryophyllales/XlsSources.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/common/AppImportApplicationListener.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/common/CacheUpdater.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/common/CdmDestinations.java -text
@@ -32,6 +41,7 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/common/CdmImportSources.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/common/ImportUtils.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/common/TestActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/cyprus/CyprusActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/cyprus/CyprusAltitudeActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/cyprus/CyprusSpecimenActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/dwca/DwcaExportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/dwca/DwcaImportActivator.java -text
@@ -52,6 +62,7 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/pilotOutputHtml/SimpleDescriptionO
 app-import/src/main/java/eu/etaxonomy/cdm/app/proibiosphere/SpecimenImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/proibiosphere/SynthesysCacheActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/proibiosphere/TaxonXImportLauncher.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/redlist/BfnXmlTestActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/redlist/RoteListeDbChecklistActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/references/EndNoteImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/AnthuriumActivator.java -text
@@ -81,8 +92,10 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/tcs/TcsSources.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/tcs/TcsXmlTestActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/util/TestDatabase.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/util/TestTransaction.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/validate/ValidateKeys.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/vibrant/DwcaScratchpadImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/vibrant/EuroMedActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/vibrant/EuroMedVibrantActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/vibrant/IopiActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/vibrant/MclActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/vibrant/VibrantActivator.java -text
@@ -104,6 +117,7 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/wp6/palmae/PalmaeProtologueImportA
 app-import/src/main/java/eu/etaxonomy/cdm/app/wp6/palmae/PalmaeTaxonXImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/wp6/palmae/UseImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/wp6/palmae/config/PalmaeProtologueImportConfigurator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/database/update/BgbmInstancesUpdater.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/PalmaeImageImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/PalmaeProtologueImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/ProtologueImport.java -text
@@ -194,6 +208,7 @@ app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusImportState.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusRow.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusTransformer.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusUserImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisAuthorImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisCommonNameImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisCurrentSpeciesImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisImageImport.java -text
@@ -212,6 +227,14 @@ app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/RoteListeDbImportConfigurat
 app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/RoteListeDbImportState.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/RoteListeDbTaxonImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/RoteListeDbTransformer.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/bfnXml/BfnXmlImportAddtionalTerms.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/bfnXml/BfnXmlImportBase.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/bfnXml/BfnXmlImportConfigurator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/bfnXml/BfnXmlImportFeature.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/bfnXml/BfnXmlImportMetaData.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/bfnXml/BfnXmlImportState.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/bfnXml/BfnXmlImportTaxonName.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/bfnXml/BfnXmlTransformer.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/validation/RoteListeDbTaxonImportValidator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/wp6/CichorieaeCommonNameImportState.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/wp6/CichorieaeImageImport.java -text
@@ -223,7 +246,7 @@ app-import/src/main/resources/Asteraceae[!!-~]Specimen[!!-~]Images[!!-~]Vienna.x
 app-import/src/main/resources/AsteraceaeSpecimenImagesVienna.mdb -text
 app-import/src/main/resources/collections/Acronyms.tab -text
 app-import/src/main/resources/distribution/distribution_cich.xls -text
-app-import/src/main/resources/eu/etaxonomy/cdm/appimportTestApplicationContext.xml -text
+app-import/src/main/resources/eu/etaxonomy/cdm/defaultIoApplicationContext.xml -text
 app-import/src/main/resources/excel/NormalExplicit.xls -text
 app-import/src/main/resources/globis.rdf.xml -text
 app-import/src/main/resources/globis_valid.rdf.xml -text
@@ -263,6 +286,20 @@ app-import/src/main/resources/specimen/SynthesysSpecimenExample.xls -text
 app-import/src/main/resources/specimenABCD/multiABCD.xml -text
 app-import/src/main/resources/tcs/Cichorium_tcs.xml -text
 app-import/src/main/resources/tcs/tcsXmlTest.xml -text
+app-import/src/test/java/eu/etaxonomy/cdm/io/redlist/bfnXml/BfnXmlImportConfiguratorTest.java -text
+app-import/src/test/resources/dbscripts/001-cdm.h2.sql -text
+app-import/src/test/resources/eu/etaxonomy/cdm/applicationContext-test.xml -text
+app-import/src/test/resources/eu/etaxonomy/cdm/io/BlankDataSet.xml -text
+app-import/src/test/resources/eu/etaxonomy/cdm/io/PUBLIC.xsd -text
+app-import/src/test/resources/eu/etaxonomy/cdm/io/bfnXml/bfnXmlTest-input.xml -text
+app-import/src/test/resources/eu/etaxonomy/cdm/io/bfnXml/rldb_Myxo.xml -text
+app-import/src/test/resources/eu/etaxonomy/cdm/io/bfnXml/rldb_Myxo.xsd -text
+app-import/src/test/resources/eu/etaxonomy/cdm/io/dataset.xsd -text
+app-import/src/test/resources/main/resources/conf.properties -text
+app-import/src/test/resources/main/resources/confOverridable.properties -text
+app-import/src/test/resources/spy.properties -text
+app-import/src/test/resources/termCodeCreator.xls -text
+app-import/src/test/resources/unitils.properties -text
 cdm-col/format/meta.tpl.txt -text
 cdm-eflora/LICENSE.TXT -text
 cdm-eflora/README.TXT -text
@@ -385,6 +422,7 @@ cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/indexFungorum/IndexFungorumImpor
 cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/indexFungorum/IndexFungorumImportConfigurator.java -text
 cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/indexFungorum/IndexFungorumImportState.java -text
 cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/indexFungorum/IndexFungorumSpeciesImport.java -text
+cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/indexFungorum/IndexFungorumSubSpeciesImport.java -text
 cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/indexFungorum/IndexFungorumSupraGeneraImport.java -text
 cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/indexFungorum/IndexFungorumTransformer.java -text
 cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/merging/FaunaEuErmsMerging.java -text
@@ -411,3 +449,4 @@ cdm-pesi/src/test/java/eu/etaxonomy/cdm/io/common/TestConnection.java -text
 cdm-pesi/src/test/java/eu/etaxonomy/cdm/io/erms/ermsErrors.txt -text
 cdm-pesi/src/test/resources/sql/Check_Import_Master.sql -text
 cdmapps-parent/pom.xml -text
+/pom.xml -text