\r
package eu.etaxonomy.cdm.app.vibrant;\r
\r
+import java.io.File;\r
import java.net.URI;\r
import java.util.UUID;\r
\r
import eu.etaxonomy.cdm.io.common.CdmDefaultImport;\r
import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;\r
import eu.etaxonomy.cdm.io.common.events.LoggingIoObserver;\r
+import eu.etaxonomy.cdm.io.dwca.in.DwcaDataImportConfiguratorBase.DatasetUse;\r
import eu.etaxonomy.cdm.io.dwca.in.DwcaImportConfigurator;\r
-import eu.etaxonomy.cdm.io.dwca.in.DwcaImportConfigurator.DatasetUse;\r
import eu.etaxonomy.cdm.io.dwca.in.IImportMapping.MappingType;\r
import eu.etaxonomy.cdm.model.name.NomenclaturalCode;\r
import eu.etaxonomy.cdm.model.reference.Reference;\r
private static final Logger logger = Logger.getLogger(DwcaScratchpadImportActivator.class);\r
\r
//database validation status (create, update, validate ...)\r
- static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;\r
+ static DbSchemaValidation hbm2dll = DbSchemaValidation.UPDATE;//UPDATE;//CREATE;//UPDATE;\r
\r
// static final URI source = dwca_emonocots_dioscoreaceae();\r
- static final URI source = dwca_emonocots_zingiberaceae();\r
-// static final URI source = dwca_emonocots_cypripedioideae();\r
+// static final URI source = dwca_emonocots_zingiberaceae();\r
+ //static final URI source = dwca_emonocots_cypripedioideae();\r
+ static final URI source = null;//dwca_antkey();//dwca_emonocots_dioscoreaceae();\r
+ \r
\r
// static final ICdmDataSource cdmDestination = CdmDestinations.localH2();\r
static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql();\r
// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test();\r
\r
//default nom code is ICZN as it allows adding publication year \r
- static final NomenclaturalCode defaultNomCode = NomenclaturalCode.ICBN;\r
+ static final NomenclaturalCode defaultNomCode = NomenclaturalCode.ICNAFP;\r
+ \r
+ //classification Name\r
+ static String classificationName = "Default classification";\r
\r
//title\r
static final String title = "Scratchpad test import";\r
config.setGuessNomenclaturalReferences(guessNomRef);\r
config.setHandleAllRefsAsCitation(handleAllRefsAsCitation);\r
config.setUseSourceReferenceAsSec(useSourceReferenceAsSec);\r
- config.setSourceReferenceTitle(title);\r
+ config.setSourceReferenceTitle(classificationName);//title);\r
+ config.setClassificationName(classificationName);\r
+ \r
+ config.setUseSourceReferenceAsSec(true);//Lorna: what shall we use as sec reference for Scratchpads data?\r
\r
CdmDefaultImport myImport = new CdmDefaultImport();\r
\r
\r
//emonocots_dioscoreaceae\r
public static URI dwca_emonocots_dioscoreaceae() {\r
- URI sourceUrl = URI.create("file:////PESIIMPORT3/vibrant/dwca/dwca_emonocots_dioscoreaceae.zip");\r
+ //URI sourceUrl = URI.create("file:////PESIIMPORT3/vibrant/dwca/dwca_emonocots_dioscoreaceae.zip");//dwca_dioscoreaceae_e_monocot.zip\r
+ URI sourceUrl = URI.create("file:///C:/Users/l.morris/Downloads/dwca_scratchpads/dwca_dioscoreaceae_e_monocot_org.zip");\r
+ return sourceUrl;\r
+ }\r
+ \r
+ //dwca_antkey_org.zip\r
+ public static URI dwca_antkey() {\r
+ //URI sourceUrl = URI.create("file:////PESIIMPORT3/vibrant/dwca/dwca_emonocots_dioscoreaceae.zip");//dwca_dioscoreaceae_e_monocot.zip\r
+ URI sourceUrl = URI.create("file:///C:/Users/l.morris/Downloads/amaryllidaceae.zip");//antkey.zip");//alismataceae.zip");//hypoxidaceae.zip");//dwca_antkey.zip");\r
return sourceUrl;\r
}\r
\r
}\r
//emonocots_cypripedioideae\r
public static URI dwca_emonocots_cypripedioideae() {\r
- URI sourceUrl = URI.create("file:////PESIIMPORT3/vibrant/dwca/dwca_emonocots_cypripedioideae.zip");\r
+ //URI sourceUrl = URI.create("file:////PESIIMPORT3/vibrant/dwca/dwca_emonocots_cypripedioideae.zip");\r
+ URI sourceUrl = URI.create("file:///C:/Users/l.morris/Downloads/dwca_scratchpads/dwca_cypripedioideae_e-monocot_org.zip");\r
return sourceUrl;\r
}\r
\r
*/\r
public static void main(String[] args) {\r
DwcaScratchpadImportActivator me = new DwcaScratchpadImportActivator();\r
- me.doImport(source, cdmDestination, classificationUuid, title, hbm2dll);\r
+\r
+ //lorna: TODO get the classification name from the dwca zip file name\r
+ classificationName = "Scratchpad classification";//"Amaryllidaceae";\r
+\r
+ // Directory path here\r
+ String path = "C:/Users/l.morris/Downloads/dwca_scratchpads/nine";\r
+ URI sourceUrl;\r
+ //URI sourceUrl = URI.create("file:////PESIIMPORT3/vibrant/dwca/dwca_emonocots_zingiberaceae.zip");\r
+\r
+ String zipFile;\r
+ File folder = new File(path);\r
+ File[] listOfFiles = folder.listFiles(); \r
+\r
+ for (int i = 0; i < listOfFiles.length; i++) \r
+ {\r
+\r
+ if (listOfFiles[i].isFile()) \r
+ {\r
+ zipFile = listOfFiles[i].getName();\r
+\r
+ if (zipFile.endsWith(".zip"))\r
+ {\r
+ //classificationName = zipFile.split(".zip")[0];\r
+ classificationName = zipFile.split("dwca_")[1];\r
+ classificationName = classificationName.split("_")[0];\r
+ System.out.println(classificationName);\r
+ //start the Scratchpad name with uppercase.\r
+ char[] stringArray = classificationName.toCharArray();\r
+ stringArray[0] = Character.toUpperCase(stringArray[0]);\r
+ classificationName = new String(stringArray) + " (Scratchpads)";\r
+ System.out.println(classificationName);\r
+ //System.exit(999);\r
+\r
+ sourceUrl = URI.create("file:///" + path + "/" + zipFile);\r
+ System.out.println(sourceUrl);\r
+ me.doImport(sourceUrl, cdmDestination, classificationUuid, title, hbm2dll);\r
+ //System.exit(999);\r
+ }\r
+ }\r
+ }\r
+ \r
+ //System.exit(999);\r
+ //list all files in the directory\r
+ //get the URI of each\r
+ //URI sourceUrl = URI.create("file:///C:/Users/l.morris/Downloads/amaryllidaceae.zip");\r
+ \r
+ //Lorna iterate through the dwca directly getting each dwca.zip and generate a URI for each source\r
+ //me.doImport(source, cdmDestination, classificationUuid, title, hbm2dll);\r
}\r
\r
}\r