-/**\r
- * \r
- */\r
-package eu.etaxonomy.cdm.database.update;\r
-\r
-import org.apache.log4j.Logger;\r
-\r
-import eu.etaxonomy.cdm.api.application.CdmApplicationController;\r
-import eu.etaxonomy.cdm.common.AccountStore;\r
-import eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor;\r
-import eu.etaxonomy.cdm.database.CdmDataSource;\r
-import eu.etaxonomy.cdm.database.DbSchemaValidation;\r
-import eu.etaxonomy.cdm.database.ICdmDataSource;\r
-import eu.etaxonomy.cdm.io.api.application.CdmIoApplicationController;\r
-import eu.etaxonomy.cdm.model.taxon.Classification;\r
-\r
-/**\r
- * @author a.mueller\r
- *\r
- */\r
-public class BgbmInstancesUpdater {\r
- private static final Logger logger = Logger.getLogger(BgbmInstancesUpdater.class);\r
- \r
- private static String integrationServer = "160.45.63.201";\r
- private static String productionServer = "160.45.63.171";\r
-// private static String testServer = "160.45.63.175";\r
- private static String testServer = "160.45.63.21"; //preliminary\r
- \r
- private static String[] integrationDatabases = new String[]{/**/"cdm_integration_cichorieae",\r
- "cdm_integration_cyprus", "cdm_integration_diptera", "cdm_integration_flora_malesiana",\r
- "cdm_integration_palmae"};\r
- \r
- private static String[] testDatabases = new String[]{"cdm_bgbm_edit_usergroup","cdm_campanulaceae", \r
- "cdm_campanulaceae_082014","cdm_caryo", "cdm_col","cdm_corvidae","cdm_cyprus","cdm_demo1","cdm_demo2",\r
- "cdm_demo3", "cdm_edit_algaterra","cdm_edit_cichorieae","cdm_edit_ildis","cdm_edit_flora_central_africa",\r
- "cdm_flora_guianas","cdm_flore_gabon","cdm_edit_flora_malesiana","cdm_edit_globis","cdm_edit_palmae", \r
- "cdm_ipni_Caryophyllaceae","cdm_mt_moose","cdm_mt_standardliste",\r
- "cdm_pesi_euromed", "cdm_pesi_erms","cdm_pesi_fauna_europaea",\r
- "cdm_proibiosphere_chenopodium_pilot","cdm_rl_mammalia","cdm_test_eckhard","cdm_test_euromed","cdm_test_gabi",\r
- "cdm_test_norbert","cdm_test_sabine","cdm_vibrant_index"};\r
- \r
-\r
- private static String[] testDatabasesOthers = new String[]{"cdm_caryo_amaranthaceae",\r
- "cdm_caryo_caryophyllales","cdm_flora_malesiana_prospective","cdm_pesi_all","cdm_salvador",\r
- };\r
- \r
- private static String[] productionDatabases = new String[]{\r
- "cdm_col", "cdm_production_acantholimon","cdm_production_algaterra",\r
- "cdm_production_amaranthaceae","cdm_production_cactaceae",\r
- "cdm_production_campanulaceae","cdm_production_caryophyllales",\r
- "cdm_production_chenopodiaceae","cdm_production_cichorieae",\r
- "cdm_production_corvidae","cdm_production_cyprus",\r
- "cdm_production_dianthus","cdm_production_diptera",\r
- "cdm_production_flora_central_africa","cdm_production_flora_malesiana",\r
- "cdm_production_flora_malesiana_prospective","cdm_production_flore_gabon",\r
- "cdm_production_globis","cdm_production_nyctaginaceae",\r
- "cdm_production_palmae","cdm_production_piB_campylopus_pilot",\r
- "cdm_production_piB_eupolybothrus_pilot","cdm_production_piB_lactarius_pilot",\r
- "cdm_production_piB_loranthaceae","cdm_production_piB_nephrolepis_pilot",\r
- "cdm_production_piB_spiders_pilot","cdm_production_polygonaceae",\r
- "cdm_production_proibiosphere_ants_pilot","cdm_production_proibiosphere_chenopodium_pilot",\r
- "cdm_production_rl_armeria_demo","cdm_production_rl_lumbricidae",\r
- "cdm_production_rl_odonata_demo","cdm_production_rl_standardliste",\r
- "cdm_production_tamaricaceae","cdm_production_vibrant_index"};\r
-\r
- static BgbmServer bgbmServer = BgbmServer.TEST;\r
- \r
- \r
- \r
- static String username = "edit";\r
- \r
- \r
- \r
- /**\r
- * @param args\r
- */\r
- public static void main(String[] args) {\r
- DbSchemaValidation schema = DbSchemaValidation.VALIDATE;\r
- String server = bgbmServer.server;\r
- for (String database : bgbmServer.databases){\r
- boolean result = true;\r
- logger.warn("Update: " + database + " ... ");\r
- ICdmDataSource dataSource = CdmDataSource.NewMySqlInstance(server, database, username, AccountStore.readOrStorePassword(server, database, username, null));\r
- try {\r
- CdmUpdater updater = new CdmUpdater();\r
- result = updater.updateToCurrentVersion(dataSource, DefaultProgressMonitor.NewInstance());\r
- CdmApplicationController appCtr = CdmIoApplicationController.NewInstance(dataSource,schema);\r
- System.out.println(appCtr.getClassificationService().count(Classification.class));\r
- } catch (Exception e) {\r
- result = false;\r
- e.printStackTrace();\r
- } \r
- if(!result ){\r
- logger.warn("Problem");\r
- break;\r
- }\r
- \r
- logger.warn("Update: " + database + " ... DONE ");\r
- }\r
- \r
- \r
- }\r
- \r
- private enum BgbmServer{\r
- INTEGRATION (integrationServer, integrationDatabases),\r
- TEST(testServer,testDatabases),\r
- PRODUCTION(productionServer,productionDatabases);\r
- private String server;\r
- private String[] databases;\r
- private BgbmServer(String server, String[] databases){\r
- this.server = server;\r
- this.databases = databases;\r
- }\r
- \r
- \r
- \r
- }\r
-}\r
+/**
+ *
+ */
+package eu.etaxonomy.cdm.database.update;
+
+import org.apache.log4j.Logger;
+
+import eu.etaxonomy.cdm.api.application.CdmApplicationController;
+import eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor;
+import eu.etaxonomy.cdm.config.AccountStore;
+import eu.etaxonomy.cdm.database.CdmDataSource;
+import eu.etaxonomy.cdm.database.DbSchemaValidation;
+import eu.etaxonomy.cdm.database.ICdmDataSource;
+import eu.etaxonomy.cdm.io.api.application.CdmIoApplicationController;
+import eu.etaxonomy.cdm.model.taxon.Classification;
+
+/**
+ * @author a.mueller
+ *
+ */
+public class BgbmInstancesUpdater {
+ private static final Logger logger = Logger.getLogger(BgbmInstancesUpdater.class);
+
+ private static String integrationServer = "160.45.63.201";
+ private static String productionServer = "160.45.63.171";
+// private static String testServer = "160.45.63.175";
+ private static String testServer = "edit-test.bgbm.fu-berlin.de"; //preliminary
+
+ private static String[] integrationDatabases = new String[]{
+ "cdm_integration_cichorieae",
+ "cdm_integration_cyprus",
+ "cdm_integration_diptera",
+ "cdm_integration_flora_malesiana",
+ "cdm_integration_palmae",
+ "cdm_integration_reference"
+ };
+
+ private static String[] testDatabases = new String[]{
+ "cdm_Test_Caryophyllales",
+ "cdm_additivity_test",
+ "cdm_bgbm_edit_usergroup",
+ "cdm_campanulaceae","cdm_caryo_nepenthes",
+ "cdm_caryo_spp","cdm_causcasus_workshop",
+ "cdm_corvidae", "cdm_cyprus","cdm_edaphobase_test",
+ "cdm_edit_algaterra", "cdm_edit_algaterra_","cdm_edit_cichorieae",
+ "cdm_edit_flora_central_africa", "cdm_edit_flora_malesiana",
+ "cdm_edit_globis", "cdm_edit_palmae",
+ "cdm_flora_cuba", "cdm_flora_guianas",
+ "cdm_flore_gabon",
+ "cdm_mt_moose",
+ "cdm_mt_standardliste",
+// "cdm_pesi_all",
+ "cdm_pesi_erms", "cdm_pesi_euromed", "cdm_pesi_fauna_europaea",
+ "cdm_phycobank",
+ "cdm_production_additivity_ontology",
+ "cdm_proibiosphere_chenopodium_pilot",
+ "cdm_rem_conf_ak", "cdm_rem_conf_am", "cdm_rem_conf_kl", "cdm_rem_conf_pp",
+ "cdm_rl_animalia","cdm_rl_german_sl","cdm_rl_mammalia", "cdm_rl_plantae",
+ "cdm_salvador","cdm_test1","cdm_test2",
+ "cdm_test_euromed",
+ "cdm_vibrant_index"
+ };
+
+ private static String[] testDatabasesOthers = new String[]{"cdm_caryo_amaranthaceae",
+ "cdm_caryo_caryophyllales","cdm_flora_malesiana_prospective","cdm_pesi_all",
+ };
+
+ private static String[] productionDatabases = new String[]{
+ "cdm_production_col",
+ "cdm_production_algaterra",
+ "cdm_production_algaterranew",
+ "cdm_production_asteraceae",
+ "cdm_production_campanulaceae",
+ "cdm_production_caryo_amaranthaceae",
+ "cdm_production_caryo_nepenthaceae",
+ "cdm_production_caryophyllales",
+ "cdm_production_caryophyllales_spp",
+ "cdm_production_cichorieae",
+ "cdm_production_corvidae",
+ "cdm_production_cyprus",
+ "cdm_production_diptera",
+ "cdm_production_edaphobase",
+ "cdm_production_euromed",
+ "cdm_production_flora_bogota",
+ "cdm_production_flora_central_africa",
+ "cdm_production_flora_cuba",
+ "cdm_production_flora_greece",
+ "cdm_production_flora_guianas",
+ "cdm_production_flora_malesiana",
+ "cdm_production_flora_malesiana_clean",
+ "cdm_production_flora_malesiana_prospective",
+ "cdm_production_flore_gabon",
+ "cdm_production_globis",
+ "cdm_production_myristicaceae",
+ "cdm_production_palmae",
+ "cdm_production_phycobank",
+ "cdm_production_piB_ants_pilot",
+ "cdm_production_piB_campylopus_pilot",
+ "cdm_production_piB_chenopodium_pilot",
+ "cdm_production_piB_eupolybothrus_pilot",
+ "cdm_production_piB_lactarius_pilot",
+ "cdm_production_piB_nephrolepis_pilot",
+ "cdm_production_piB_spiders_pilot",
+ "cdm_production_rl_animalia",
+ "cdm_production_rl_animalia_final",
+ "cdm_production_rl_armeria_demo",
+ "cdm_production_rl_german_sl",
+ "cdm_production_rl_lumbricidae",
+ "cdm_production_rl_mammalia",
+ "cdm_production_rl_moose",
+ "cdm_production_rl_plantae",
+ "cdm_production_rl_standardliste",
+ "cdm_production_rubiaceae_mexico",
+ "cdm_production_salvador",
+ "cdm_production_vibrant_index"
+ };
+
+ static BgbmServer bgbmServer = BgbmServer.TEST;
+
+ static String username = "edit";
+
+ private static void updateToCurrentVersion() {
+ DbSchemaValidation schema = DbSchemaValidation.VALIDATE;
+ String server = bgbmServer.server;
+ for (String database : bgbmServer.databases){
+ logger.warn("Update: " + database + " ... ");
+ ICdmDataSource dataSource = CdmDataSource.NewMySqlInstance(server, database, username, AccountStore.readOrStorePassword(server, database, username, null));
+ SchemaUpdateResult result = new SchemaUpdateResult();
+ try {
+ CdmUpdater updater = new CdmUpdater();
+ System.out.println(database);
+ result = updater.updateToCurrentVersion(dataSource, DefaultProgressMonitor.NewInstance());
+ System.out.println(result.createReport());
+ CdmApplicationController appCtr = CdmIoApplicationController.NewInstance(dataSource,schema);
+ System.out.println(appCtr.getClassificationService().count(Classification.class));
+ } catch (Exception e) {
+ result.addException(e, e.getMessage());
+ e.printStackTrace();
+ }
+ if(!result.isSuccess() ){
+ logger.warn("Problem");
+ System.exit(1);
+ }
+
+ logger.warn("Update: " + database + " ... DONE ");
+ }
+ }
+
+ private static void singleUpdateStep(boolean startApp) {
+ DbSchemaValidation schema = DbSchemaValidation.VALIDATE;
+ String server = bgbmServer.server;
+ for (String database : bgbmServer.databases){
+ logger.warn("Update: " + database + " ... ");
+ ICdmDataSource dataSource = CdmDataSource.NewMySqlInstance(server, database, username, AccountStore.readOrStorePassword(server, database, username, null));
+ SchemaUpdateResult result = new SchemaUpdateResult();
+ try {
+ System.out.println(database);
+ //define step here !!!
+ SchemaUpdaterStepBase step = IndexRenamer.NewStringInstance(null, "TaxonName",
+ "taxonNameBaseNameCacheIndex", "taxonNameNameCacheIndex", "nameCache", 255);
+ SchemaUpdaterStepBase step2 = IndexRenamer.NewStringInstance(null, "TaxonName",
+ "taxonNameBaseTitleCacheIndex", "taxonNameTitleCacheIndex", "titleCache", 333);
+ dataSource.startTransaction();
+ step.invoke(dataSource, DefaultProgressMonitor.NewInstance(), CaseType.caseTypeOfDatasource(dataSource), result);
+ step2.invoke(dataSource, DefaultProgressMonitor.NewInstance(), CaseType.caseTypeOfDatasource(dataSource), result);
+ dataSource.commitTransaction();
+ System.out.println(result.createReport());
+ if (startApp){
+ CdmApplicationController appCtr = CdmIoApplicationController.NewInstance(dataSource,schema);
+ System.out.println(appCtr.getClassificationService().count(Classification.class));
+ }
+ } catch (Exception e) {
+ result.addException(e, e.getMessage());
+ e.printStackTrace();
+ }
+ if(!result.isSuccess() ){
+ logger.warn("Problem");
+ System.exit(1);
+ }
+
+ logger.warn("Update: " + database + " ... DONE ");
+ }
+
+ }
+
+ public static void main(String[] args) {
+ updateToCurrentVersion();
+// singleUpdateStep(false);
+ System.exit(0);
+ }
+
+ private enum BgbmServer{
+ INTEGRATION (integrationServer, integrationDatabases),
+ TEST(testServer,testDatabases),
+ PRODUCTION(productionServer,productionDatabases);
+ private final String server;
+ private final String[] databases;
+ private BgbmServer(String server, String[] databases){
+ this.server = server;
+ this.databases = databases;
+ }
+ }
+}
BGBM BDI Projects / cdmlib-apps.git / blobdiff