use euroMed areas and some minor clean up; enable authentication for user import

[cdmlib-apps.git] / .gitattributes

diff --git a/.gitattributes b/.gitattributes
index 9de90aa64737e942c1555dfefcc34818a8aafefb..d26cae5fbf0ffd0b1456742708bc77e7d67c9f90 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -21,7 +21,9 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/MTMooseActivator
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/MTStandardlisteActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/SalvadorActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/SalvadorExport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/SourceBase.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/TreeCreator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/caryophyllales/CaryoActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/common/AppImportApplicationListener.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/common/CacheUpdater.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/common/CdmDestinations.java -text
@@ -37,6 +39,8 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/excelImport/taxa/NormalExplicitAct
 app-import/src/main/java/eu/etaxonomy/cdm/app/excelImport/taxa/UseSummaryActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/exel/NormalExplicitTestActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/globis/GlobisActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/i4life/col/ColDwcaExportActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/i4life/col/ColDwcaImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/images/AbstractImageImporter.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/images/ImageImportConfigurator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/images/ImageImportState.java -text
@@ -44,6 +48,9 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/jaxb/CdmDiffActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/jaxb/JaxbExportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/jaxb/JaxbImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/pilotOutputHtml/SimpleDescriptionOutput.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/proibiosphere/SpecimenImportActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/proibiosphere/SynthesysCacheActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/proibiosphere/TaxonXImportLauncher.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/redlist/RoteListeDbChecklistActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/references/EndNoteImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/AnthuriumActivator.java -text
@@ -56,6 +63,7 @@ app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/FreshwaterAquaticInsectsActiva
 app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/FreshwaterAquaticInsectsUpdateActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/LIASActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/LIASUpdateActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/SDDExportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/SDDImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/SDDSources.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/ValRosandraFRIDAKeyActivator.java -text
@@ -99,19 +107,29 @@ app-import/src/main/java/eu/etaxonomy/cdm/io/PalmaeImageImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/PalmaeProtologueImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/ProtologueImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraCollectionImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraDnaImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraEcoFactImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraFactEcologyImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraImageImportBase.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraImportConfigurator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraImportState.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraImportTransformer.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraMorphologyImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraPictureImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraSiteImagesImport.java -text
-app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraSpecimenImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraSpecimenImportBase.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraTypeImagesImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraTypeImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraVoucherImagesImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/validation/AlgaTerraCollectionImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/validation/AlgaTerraDnaImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/validation/AlgaTerraMorphologyImportValidator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/validation/AlgaTerraSpecimenImportValidator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/validation/AlgaTerraTypeImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/caryo/CaryoImportConfigurator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/caryo/CaryoImportState.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/caryo/CaryoTaxonImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/caryo/CaryoTransformer.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusDistributionImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusDistributionRow.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusExcelImport.java -text
@@ -120,12 +138,19 @@ app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusImportState.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusRow.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusTransformer.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/cyprus/CyprusUserImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisCommonNameImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisCurrentSpeciesImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisImageImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisImportBase.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisImportConfigurator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisImportState.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisReferenceImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisSpecTaxImport.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/GlobisTransformer.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/globis/validation/GlobisCurrentSpeciesImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/globis/validation/GlobisImageImportValidator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/globis/validation/GlobisReferenceImportValidator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/io/globis/validation/GlobisSpecTaxaImportValidator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/RoteListeDbImportBase.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/RoteListeDbImportConfigurator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/RoteListeDbImportState.java -text
@@ -175,6 +200,7 @@ app-import/src/main/resources/sdd/LIAS_Main.sdd11.xml -text
 app-import/src/main/resources/sdd/SDD-Test-Simple.xml -text
 app-import/src/main/resources/sdd/Val-Rosandra-FRIDA-Key.sdd11.xml -text
 app-import/src/main/resources/sdd/Xper2-import-export.sdd.xml -text
+app-import/src/main/resources/sdd/ant.sdd.xml -text
 app-import/src/main/resources/sdd/cichorieae-Xper2.xml -text
 app-import/src/main/resources/sdd/phlebo.sdd.xml -text
 app-import/src/main/resources/specimen/SynthesysSpecimenExample.xls -text
@@ -191,10 +217,12 @@ cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/CentralAfricaChecklistActiv
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/CentralAfricaEricaceaeActivator.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/CentralAfricaFernsActivator.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/CentralAfricaFernsFdacImportActivator.java -text
+cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/EfloraActivatorBase.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/EfloraSources.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/FloraGuianasActivator.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/FloraMalesianaActivator.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/FloraMalesianaActivator_OLD.java -text
+cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/FloraMalesianaProspectiveTester.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/FloreGabonActivator.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/testUpdate/EricaceaeTestUpdateActivator.java -text
 cdm-eflora/src/main/java/eu/etaxonomy/cdm/io/eflora/EfloraImportBase.java -text
@@ -328,3 +356,4 @@ cdm-pesi/src/main/resources/log4j.properties -text
 cdm-pesi/src/test/java/eu/etaxonomy/cdm/io/common/TestConnection.java -text
 cdm-pesi/src/test/java/eu/etaxonomy/cdm/io/erms/ermsErrors.txt -text
 cdm-pesi/src/test/resources/sql/Check_Import_Master.sql -text
+cdmapps-parent/pom.xml -text