app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/IldisActivator.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2009 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10 package eu.etaxonomy.cdm.app.berlinModelImport;
  11
  12 import java.io.File;
  13 import java.util.UUID;
  14
  15 import org.apache.log4j.Logger;
  16
  17 import eu.etaxonomy.cdm.api.application.CdmApplicationController;
  18 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  19 import eu.etaxonomy.cdm.app.pesi.FaunaEuropaeaActivator;
  20 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  21 import eu.etaxonomy.cdm.database.ICdmDataSource;
  22 import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;
  23 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  24 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  25 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  26 import eu.etaxonomy.cdm.io.common.IImportConfigurator.EDITOR;
  27 import eu.etaxonomy.cdm.io.common.Source;
  28 import eu.etaxonomy.cdm.model.description.Feature;
  29 import eu.etaxonomy.cdm.model.description.FeatureNode;
  30 import eu.etaxonomy.cdm.model.description.FeatureTree;
  31 import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
  32
  33 /**
  34  * @author a.mueller
  35  * @date 03.12.2010
  36  *
  37  */
  38 public class IldisActivator {
  39         private static final Logger logger = Logger.getLogger(FaunaEuropaeaActivator.class);
  40         //database validation status (create, update, validate ...)
  41         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  42         static final Source berlinModelSource = BerlinModelSources.ILDIS();
  43         static final ICdmDataSource cdmDestination = CdmDestinations.cdm_ildis_dev();
  44
  45         static final UUID secUuid = UUID.fromString("a7f29364-ce98-4c1d-ad2e-3d889cc5885c");
  46         static final UUID classificationUuid = UUID.fromString("c7a4e447-ca1e-46e9-adb9-037dab039ccc");
  47         static final int sourceSecId = 7800000;
  48
  49         static final UUID featureTreeUuid = UUID.fromString("9703afa5-3104-4b3b-b498-f549c0df2d2a");
  50         static final Object[] featureKeyList = new Integer[]{1, 43, 31, 4, 12, 98, 41};
  51
  52         /* --------- MEDIA recources ------------ */
  53         static final boolean stopOnMediaErrors = true;
  54         static final String protologueUrlString = "http://wp5.e-taxonomy.eu/dataportal/cichorieae/media/protolog/";
  55         //Mac
  56         //static final File protologuePath = new File("/Volumes/protolog/protolog/");
  57         //Windows
  58         public static final String imageFolderString  = "//media/editwp6/photos";
  59         static final File protologuePath = new File("//media/editwp6/protolog");
  60 //      public static final File imageFolder  = new File("/media/photos");
  61 //      static final File protologuePath = new File("/media/protolog");
  62         /* -------------------------------------- */
  63
  64         // set to zero for unlimited nameFacts
  65         static final int recordsPerTransaction = 2000;
  66
  67         //should the other imports run as well?
  68         static final boolean includeImages = true;
  69
  70
  71         //check - import
  72         static final CHECK check = CHECK.CHECK_AND_IMPORT;
  73
  74         //editor - import
  75         static final EDITOR editor = EDITOR.EDITOR_AS_EDITOR;
  76
  77         //NomeclaturalCode
  78         static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICBN;
  79
  80         //ignore null
  81         static final boolean ignoreNull = true;
  82
  83 // **************** ALL *********************
  84
  85         static final boolean doUser = true;
  86         //authors
  87         static final boolean doAuthors = true;
  88         //references
  89         static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  90         //names
  91         static final boolean doTaxonNames = true;
  92         static final boolean doRelNames = true;
  93         static final boolean doNameStatus = true;
  94         static final boolean doTypes = true;
  95         static final boolean doNameFacts = true;
  96
  97         //taxa
  98         static final boolean doTaxa = true;
  99         static final boolean doRelTaxa = true;
 100         static final boolean doFacts = true;
 101         static final boolean doOccurences = true;
 102         static final boolean doCommonNames = true;
 103
 104         //etc.
 105         static final boolean doMarker = true;
 106
 107
 108 // **************** SELECTED *********************
 109 //
 110 //      static final boolean doUser = false;
 111 //      //authors
 112 //      static final boolean doAuthors = false;
 113 //      //references
 114 //      static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;
 115 //      //names
 116 //      static final boolean doTaxonNames = false;
 117 //      static final boolean doRelNames = false;
 118 //      static final boolean doNameStatus = false;
 119 //      static final boolean doTypes = false;
 120 //      static final boolean doNameFacts = false;
 121 //
 122 //      //taxa
 123 //      static final boolean doTaxa = false;
 124 //      static final boolean doRelTaxa = false;
 125 //      static final boolean doCommonNames = false;
 126 //      static final boolean doFacts = false;
 127 //      static final boolean doOccurences = false;
 128 //
 129 //      //etc.
 130 //      static final boolean doMarker = false;
 131
 132
 133         private boolean doInvoke(ICdmDataSource destination){
 134                 boolean success = true;
 135                 Source source = berlinModelSource;
 136
 137                 BerlinModelImportConfigurator bmImportConfigurator = BerlinModelImportConfigurator.NewInstance(source,  destination);
 138
 139                 bmImportConfigurator.setClassificationUuid(classificationUuid);
 140                 bmImportConfigurator.setSourceSecId(sourceSecId);
 141
 142                 bmImportConfigurator.setNomenclaturalCode(nomenclaturalCode);
 143
 144                 bmImportConfigurator.setIgnoreNull(ignoreNull);
 145                 bmImportConfigurator.setDoAuthors(doAuthors);
 146                 bmImportConfigurator.setDoReferences(doReferences);
 147                 bmImportConfigurator.setDoTaxonNames(doTaxonNames);
 148                 bmImportConfigurator.setDoRelNames(doRelNames);
 149                 bmImportConfigurator.setDoNameStatus(doNameStatus);
 150                 bmImportConfigurator.setDoTypes(doTypes);
 151                 bmImportConfigurator.setDoNameFacts(doNameFacts);
 152
 153                 bmImportConfigurator.setDoTaxa(doTaxa);
 154                 bmImportConfigurator.setDoRelTaxa(doRelTaxa);
 155                 bmImportConfigurator.setDoFacts(doFacts);
 156                 bmImportConfigurator.setDoOccurrence(doOccurences);
 157                 bmImportConfigurator.setDoCommonNames(doCommonNames);
 158
 159                 bmImportConfigurator.setDoMarker(doMarker);
 160                 bmImportConfigurator.setDoUser(doUser);
 161                 bmImportConfigurator.setEditor(editor);
 162                 bmImportConfigurator.setDbSchemaValidation(hbm2dll);
 163                 bmImportConfigurator.setRecordsPerTransaction(recordsPerTransaction);
 164
 165
 166 //              // protologueResourceLocations
 167 //              if ( protologuePath.exists() && protologuePath.isDirectory()){
 168 //                      bmImportConfigurator.setMediaUrl(protologueUrlString);
 169 //                      bmImportConfigurator.setMediaPath(protologuePath);
 170 //              }else{
 171 //                      if(stopOnMediaErrors){
 172 //                              logger.error("Could not configure protologue ResourceLocations -> will quit.");
 173 //                              System.exit(-1);
 174 //                      }
 175 //                      logger.error("Could not configure protologue ResourceLocations");
 176 //              }
 177 //
 178 //              File imageFolder = new File(imageFolderString);
 179 //              // also check the image source folder
 180 //              if ( !imageFolder.exists() || !imageFolder.isDirectory()){
 181 //                      if(stopOnMediaErrors){
 182 //                              logger.error("Could not configure imageFolder  -> will quit.");
 183 //                              System.exit(-1);
 184 //                      }
 185 //                      logger.error("Could not configure imageFolder");
 186 //              }
 187
 188                 bmImportConfigurator.setCheck(check);
 189                 bmImportConfigurator.setEditor(editor);
 190
 191                 // invoke import
 192                 CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>();
 193                 success &= bmImport.invoke(bmImportConfigurator);
 194
 195                 if (doFacts && (bmImportConfigurator.getCheck().equals(CHECK.CHECK_AND_IMPORT)  || bmImportConfigurator.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK) )   ){
 196                         CdmApplicationController app = bmImport.getCdmAppController();
 197
 198                         //make feature tree
 199                         FeatureTree tree = TreeCreator.flatTree(featureTreeUuid, bmImportConfigurator.getFeatureMap(), featureKeyList);
 200                         FeatureNode imageNode = FeatureNode.NewInstance(Feature.IMAGE());
 201                         tree.getRoot().addChild(imageNode);
 202                         FeatureNode distributionNode = FeatureNode.NewInstance(Feature.DISTRIBUTION());
 203                         tree.getRoot().addChild(distributionNode, 2);
 204                         app.getFeatureTreeService().saveOrUpdate(tree);
 205                 }
 206
 207                 System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");
 208
 209
 210 //              if (includeImages) {
 211 //                      System.out.println("Start importing images ...");
 212 //                      CdmDefaultImport<IImportConfigurator> imageImporter = new CdmDefaultImport<IImportConfigurator>();
 213 //                      URI imageFolderCichorieae;
 214 //                      try {
 215 //                              imageFolderCichorieae = new URI(CichorieaeActivator.imageFolderString);
 216 //                              ImageImportConfigurator imageConfigurator = ImageImportConfigurator.NewInstance(
 217 //                                              imageFolderCichorieae, destination, CichorieaeImageImport.class);
 218 //                              imageConfigurator.setSecUuid(secUuid);
 219 //                              imageConfigurator.setClassificationUuid(classificationUuid);
 220 //                              success &= imageImporter.invoke(imageConfigurator);
 221 //                      } catch (URISyntaxException e) {
 222 //                              e.printStackTrace();
 223 //                      }
 224 //                              System.out.println("End importing images ...");
 225 //              }
 226
 227                 logger.warn("!!!! NOTE: RefDetail notes and RelPTaxon notes are not imported automatically. Please check for these notes and import them manually.");
 228
 229                 return success;
 230
 231         }
 232
 233         /**
 234          * @param args
 235          */
 236         public static void main(String[] args) {
 237                 ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;
 238
 239                 System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") to " + destination.getDatabase() + " ...");
 240                 IldisActivator me = new IldisActivator();
 241                 me.doInvoke(destination);
 242
 243         }
 244 }