root/trunk/cdmlib/cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NameTypeDesignationStatus.java

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Javadoc for NameTypeDesignations? (monotypy and orig.desc.)

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1// $Id$
2/**
3* Copyright (C) 2007 EDIT
4* European Distributed Institute of Taxonomy
5* http://www.e-taxonomy.eu
6*
7* The contents of this file are subject to the Mozilla Public License Version 1.1
8* See LICENSE.TXT at the top of this package for the full license terms.
9*/
10
11package eu.etaxonomy.cdm.model.name;
12
13import java.util.HashMap;
14import java.util.Map;
15import java.util.UUID;
16
17import javax.persistence.Entity;
18import javax.persistence.Transient;
19import javax.xml.bind.annotation.XmlAccessType;
20import javax.xml.bind.annotation.XmlAccessorType;
21import javax.xml.bind.annotation.XmlType;
22
23import org.apache.log4j.Logger;
24import org.hibernate.envers.Audited;
25import org.hibernate.search.annotations.Indexed;
26
27import eu.etaxonomy.cdm.model.common.TermVocabulary;
28
29/**
30 * The terms in this class define the status of a {@link NameTypeDesignation name type designation}.
31 *
32 * @author a.babadshanjan
33 * @version 1.0
34 * @created 20.03.2009
35 */
36@XmlAccessorType(XmlAccessType.FIELD)
37@XmlType(name = "NameTypeDesignationStatus")
38@Entity
39@Indexed(index = "eu.etaxonomy.cdm.model.common.DefinedTermBase")
40@Audited
41public class NameTypeDesignationStatus extends TypeDesignationStatusBase<NameTypeDesignationStatus> {
42        private static final long serialVersionUID = -8801837496688711907L;
43        @SuppressWarnings("unused")
44        private static final Logger logger = Logger.getLogger(NameTypeDesignationStatus.class);
45
46        private static final UUID uuidAutomatic = UUID.fromString("e89d8b21-615a-4602-913f-1625bf39a69f");
47        private static final UUID uuidMonotypy = UUID.fromString("3fc639b2-9a64-45f8-9a81-657a4043ad74");
48        private static final UUID uuidNotApplicable = UUID.fromString("91a9d6a9-7754-41cd-9f7e-be136f599f7e");
49        private static final UUID uuidOriginalDesignation = UUID.fromString("40032a44-973b-4a64-b25e-76f86c3a753c");
50        private static final UUID uuidPresentDesignation = UUID.fromString("e5f38f5d-995d-4470-a036-1a9792a543fc");
51        private static final UUID uuidSubsequentMonotypy = UUID.fromString("2b5806d8-31b0-406e-a32a-4adac0c89ae4");
52        private static final UUID uuidSubsequentDesignation = UUID.fromString("3e449e7d-a03c-4431-a7d3-aa258406f6b2");
53        private static final UUID uuidTautonymy = UUID.fromString("84521f09-3e10-43f5-aa6f-2173a55a6790");
54        private static final UUID uuidLectotype = UUID.fromString("4177c938-b741-40e1-95e5-4c53bd1ed87d");
55       
56        /**
57         * Factory method: creates an additional type designation status instance
58         * with a description (in the {@link eu.etaxonomy.cdm.model.common.Language#DEFAULT() default language}), a label
59         * and a label abbreviation.
60         *
61         * @param       term             the string (in the default language) describing the
62         *                                               new name type designation status to be created
63         * @param       label            the string identifying the new name type designation
64         *                                               status to be created
65         * @param       labelAbbrev  the string identifying (in abbreviated form) the
66         *                                               new name type designation status to be created
67         */
68        public static NameTypeDesignationStatus NewInstance(String term, String label, String labelAbbrev){
69                return new NameTypeDesignationStatus(term, label, labelAbbrev);
70        }
71       
72        protected static Map<UUID, NameTypeDesignationStatus> termMap = null;           
73       
74        protected static NameTypeDesignationStatus findTermByUuid(UUID uuid){
75                if (termMap == null){
76                        return null;
77                }
78                return (NameTypeDesignationStatus)termMap.get(uuid);
79        }
80
81        // ************* CONSTRUCTORS *************/   
82
83        /**
84         * Class constructor: creates a new empty name type designation status instance.
85         *
86         * @see         #NameTypeDesignationStatus(String, String, String)
87         */
88        @Deprecated //public use by term initializer only TODO needs to be changed
89        public NameTypeDesignationStatus() {
90        }
91       
92        protected NameTypeDesignationStatus(String term, String label, String labelAbbrev) {
93                super(term, label, labelAbbrev);
94        }
95
96//************************** METHODS ********************************
97       
98        /* (non-Javadoc)
99         * @see eu.etaxonomy.cdm.model.common.DefinedTermBase#resetTerms()
100         */
101        @Override
102        public void resetTerms(){
103                termMap = null;
104        }
105
106
107        /**
108         * Returns the "automatic" name type designation status.</BR>
109     * If a new name has to be established for a genus name this new name automatically gets
110     * the same type species as the old name.
111     * ICZN 67.8
112         */
113        public static final NameTypeDesignationStatus AUTOMATIC(){
114                return findTermByUuid(uuidAutomatic);
115        }
116       
117        /**
118         * Returns the "monotypy" name type designation status.</BR>
119         * Only one species was included in original genus description.
120         * ICZN 68.3.
121         * No {@linkplain TypeDesignationBase#getCitation() citation} is needed
122         * for a monotypy as the type species is decided within the original paper.
123         */
124        public static final NameTypeDesignationStatus MONOTYPY(){
125                return findTermByUuid(uuidMonotypy);
126        }
127       
128        /**
129         * Returns the "not applicable" name type designation status.</BR>
130         * Used in the BDWD (BioSystematic Database of World Diptera) for
131         * nomina nuda, emendations and misspellings.
132         */
133        public static final NameTypeDesignationStatus NOT_APPLICABLE(){
134                return findTermByUuid(uuidNotApplicable);
135        }
136       
137        /**
138         * Returns the "original designation" name type designation status.</BR>
139         * The type species is designated in the original genus description
140         * (this includes indication in the species name typicus).
141         * ICZN 68.2<Br>
142         * No {@linkplain TypeDesignationBase#getCitation() citation} is needed
143         * for an original designation as the type species is decided within the original paper.
144         */
145        public static final NameTypeDesignationStatus ORIGINAL_DESIGNATION(){
146                return findTermByUuid(uuidOriginalDesignation);
147        }
148       
149        /**
150         * Returns the "present designation" name type designation status.</BR>
151         * The type species is designated now (maybe possible in future,
152         * after ICZN has changed and online publications are available).
153         */
154        public static final NameTypeDesignationStatus PRESENT_DESIGNATION(){
155                return findTermByUuid(uuidPresentDesignation);
156        }
157       
158        /**
159         * Returns the "subsequent monotypy" name type designation status.</BR>
160         * If only one nominal species was first subsequently included
161         * in a nominal genus or subgenus established without included species,
162         * that nominal species is automatically fixed as the type species,
163         * by subsequent monotypy.
164         * ICZN 69.3
165         */
166        public static final NameTypeDesignationStatus SUBSEQUENT_MONOTYPY(){
167                return findTermByUuid(uuidSubsequentMonotypy);
168        }
169       
170        /**
171         * Returns the "subsequent designation" name type designation status.</BR>
172         * Several species were included in the original genus description.
173         * One of these has been designated as type species in a later publication.
174         *
175         * ICZN 69.1
176         */
177        public static final NameTypeDesignationStatus SUBSEQUENT_DESIGNATION(){
178                return findTermByUuid(uuidSubsequentDesignation);
179        }
180
181       
182        /**
183         * Returns the lectotype name type designation status.</BR>
184         * This may be the same as a {@link SUBSEQUENT_DESIGNATION()} but used in botany.
185         * Maybe these 2 status will be merged in future.
186         */
187        public static final NameTypeDesignationStatus LECTOTYPE(){
188                return findTermByUuid(uuidLectotype);
189        }
190       
191        /**
192         * Returns the "tautonomy" name type designation status.</BR>
193         * The genus name is the same as the species name of one of the included species.
194         * ICZN 68.4, 68.5
195         */
196        public static final NameTypeDesignationStatus TAUTONYMY(){
197                return findTermByUuid(uuidTautonymy);
198        }
199
200       
201        @Override
202        protected void setDefaultTerms(TermVocabulary<NameTypeDesignationStatus> termVocabulary) {
203                termMap = new HashMap<UUID, NameTypeDesignationStatus>();
204                for (NameTypeDesignationStatus term : termVocabulary.getTerms()){
205                        termMap.put(term.getUuid(), term);
206                }
207        }
208       
209        /**
210         * Returns the boolean value indicating whether <i>this</i> type designation
211         * status is itself "lectotype" or a kind of "lectotype" (true) or not
212         * (false). Returns false if <i>this</i> type designation status is null.<BR>
213         * A lectotype is a {@link eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase specimen or illustration} designated as the
214         * nomenclatural type, when no holotype was indicated at the time of
215         * publication of the "type-bringing" {@link TaxonNameBase taxon name}, when the
216         * holotype is found to be assigned to taxon names belonging to more than
217         * one {@link HomotypicalGroup homotypical group}, or as long as it is missing.
218         *
219         * @see  #LECTOTYPE()
220         * @see  #HOLOTYPE()
221         * @see  eu.etaxonomy.cdm.model.common.DefinedTermBase#getKindOf()
222         */
223        @Transient
224        public boolean isLectotype(){
225                if (
226                                this.equals(LECTOTYPE()) ||
227                                this.equals(SUBSEQUENT_DESIGNATION()) ||
228                                this.equals(PRESENT_DESIGNATION() )     
229                                ){
230                        return true;
231                }else{
232                        return false;
233                }
234        }
235}
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