| 1 | // $Id$ |
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| 2 | /** |
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| 3 | * Copyright (C) 2007 EDIT |
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| 4 | * European Distributed Institute of Taxonomy |
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| 5 | * http://www.e-taxonomy.eu |
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| 6 | * |
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| 7 | * The contents of this file are subject to the Mozilla Public License Version 1.1 |
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| 8 | * See LICENSE.TXT at the top of this package for the full license terms. |
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| 9 | */ |
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| 10 | |
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| 11 | package eu.etaxonomy.cdm.model.name; |
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| 12 | |
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| 13 | import java.util.HashMap; |
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| 14 | import java.util.Map; |
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| 15 | import java.util.UUID; |
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| 16 | |
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| 17 | import javax.persistence.Entity; |
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| 18 | import javax.persistence.Transient; |
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| 19 | import javax.xml.bind.annotation.XmlAccessType; |
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| 20 | import javax.xml.bind.annotation.XmlAccessorType; |
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| 21 | import javax.xml.bind.annotation.XmlType; |
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| 22 | |
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| 23 | import org.apache.log4j.Logger; |
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| 24 | import org.hibernate.envers.Audited; |
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| 25 | import org.hibernate.search.annotations.Indexed; |
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| 26 | |
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| 27 | import eu.etaxonomy.cdm.model.common.TermVocabulary; |
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| 28 | |
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| 29 | /** |
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| 30 | * The terms in this class define the status of a {@link NameTypeDesignation name type designation}. |
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| 31 | * |
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| 32 | * @author a.babadshanjan |
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| 33 | * @version 1.0 |
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| 34 | * @created 20.03.2009 |
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| 35 | */ |
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| 36 | @XmlAccessorType(XmlAccessType.FIELD) |
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| 37 | @XmlType(name = "NameTypeDesignationStatus") |
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| 38 | @Entity |
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| 39 | @Indexed(index = "eu.etaxonomy.cdm.model.common.DefinedTermBase") |
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| 40 | @Audited |
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| 41 | public class NameTypeDesignationStatus extends TypeDesignationStatusBase<NameTypeDesignationStatus> { |
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| 42 | private static final long serialVersionUID = -8801837496688711907L; |
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| 43 | @SuppressWarnings("unused") |
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| 44 | private static final Logger logger = Logger.getLogger(NameTypeDesignationStatus.class); |
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| 45 | |
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| 46 | private static final UUID uuidAutomatic = UUID.fromString("e89d8b21-615a-4602-913f-1625bf39a69f"); |
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| 47 | private static final UUID uuidMonotypy = UUID.fromString("3fc639b2-9a64-45f8-9a81-657a4043ad74"); |
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| 48 | private static final UUID uuidNotApplicable = UUID.fromString("91a9d6a9-7754-41cd-9f7e-be136f599f7e"); |
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| 49 | private static final UUID uuidOriginalDesignation = UUID.fromString("40032a44-973b-4a64-b25e-76f86c3a753c"); |
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| 50 | private static final UUID uuidPresentDesignation = UUID.fromString("e5f38f5d-995d-4470-a036-1a9792a543fc"); |
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| 51 | private static final UUID uuidSubsequentMonotypy = UUID.fromString("2b5806d8-31b0-406e-a32a-4adac0c89ae4"); |
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| 52 | private static final UUID uuidSubsequentDesignation = UUID.fromString("3e449e7d-a03c-4431-a7d3-aa258406f6b2"); |
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| 53 | private static final UUID uuidTautonymy = UUID.fromString("84521f09-3e10-43f5-aa6f-2173a55a6790"); |
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| 54 | private static final UUID uuidLectotype = UUID.fromString("4177c938-b741-40e1-95e5-4c53bd1ed87d"); |
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| 55 | |
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| 56 | /** |
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| 57 | * Factory method: creates an additional type designation status instance |
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| 58 | * with a description (in the {@link eu.etaxonomy.cdm.model.common.Language#DEFAULT() default language}), a label |
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| 59 | * and a label abbreviation. |
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| 60 | * |
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| 61 | * @param term the string (in the default language) describing the |
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| 62 | * new name type designation status to be created |
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| 63 | * @param label the string identifying the new name type designation |
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| 64 | * status to be created |
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| 65 | * @param labelAbbrev the string identifying (in abbreviated form) the |
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| 66 | * new name type designation status to be created |
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| 67 | */ |
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| 68 | public static NameTypeDesignationStatus NewInstance(String term, String label, String labelAbbrev){ |
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| 69 | return new NameTypeDesignationStatus(term, label, labelAbbrev); |
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| 70 | } |
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| 71 | |
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| 72 | protected static Map<UUID, NameTypeDesignationStatus> termMap = null; |
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| 73 | |
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| 74 | protected static NameTypeDesignationStatus findTermByUuid(UUID uuid){ |
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| 75 | if (termMap == null){ |
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| 76 | return null; |
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| 77 | } |
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| 78 | return (NameTypeDesignationStatus)termMap.get(uuid); |
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| 79 | } |
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| 80 | |
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| 81 | // ************* CONSTRUCTORS *************/ |
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| 82 | |
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| 83 | /** |
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| 84 | * Class constructor: creates a new empty name type designation status instance. |
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| 85 | * |
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| 86 | * @see #NameTypeDesignationStatus(String, String, String) |
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| 87 | */ |
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| 88 | @Deprecated //public use by term initializer only TODO needs to be changed |
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| 89 | public NameTypeDesignationStatus() { |
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| 90 | } |
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| 91 | |
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| 92 | protected NameTypeDesignationStatus(String term, String label, String labelAbbrev) { |
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| 93 | super(term, label, labelAbbrev); |
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| 94 | } |
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| 95 | |
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| 96 | //************************** METHODS ******************************** |
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| 97 | |
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| 98 | /* (non-Javadoc) |
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| 99 | * @see eu.etaxonomy.cdm.model.common.DefinedTermBase#resetTerms() |
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| 100 | */ |
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| 101 | @Override |
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| 102 | public void resetTerms(){ |
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| 103 | termMap = null; |
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| 104 | } |
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| 105 | |
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| 106 | |
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| 107 | /** |
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| 108 | * Returns the "automatic" name type designation status.</BR> |
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| 109 | * If a new name has to be established for a genus name this new name automatically gets |
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| 110 | * the same type species as the old name. |
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| 111 | * ICZN 67.8 |
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| 112 | */ |
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| 113 | public static final NameTypeDesignationStatus AUTOMATIC(){ |
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| 114 | return findTermByUuid(uuidAutomatic); |
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| 115 | } |
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| 116 | |
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| 117 | /** |
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| 118 | * Returns the "monotypy" name type designation status.</BR> |
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| 119 | * Only one species was included in original genus description. |
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| 120 | * ICZN 68.3. |
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| 121 | * No {@linkplain TypeDesignationBase#getCitation() citation} is needed |
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| 122 | * for a monotypy as the type species is decided within the original paper. |
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| 123 | */ |
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| 124 | public static final NameTypeDesignationStatus MONOTYPY(){ |
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| 125 | return findTermByUuid(uuidMonotypy); |
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| 126 | } |
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| 127 | |
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| 128 | /** |
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| 129 | * Returns the "not applicable" name type designation status.</BR> |
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| 130 | * Used in the BDWD (BioSystematic Database of World Diptera) for |
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| 131 | * nomina nuda, emendations and misspellings. |
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| 132 | */ |
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| 133 | public static final NameTypeDesignationStatus NOT_APPLICABLE(){ |
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| 134 | return findTermByUuid(uuidNotApplicable); |
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| 135 | } |
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| 136 | |
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| 137 | /** |
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| 138 | * Returns the "original designation" name type designation status.</BR> |
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| 139 | * The type species is designated in the original genus description |
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| 140 | * (this includes indication in the species name typicus). |
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| 141 | * ICZN 68.2<Br> |
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| 142 | * No {@linkplain TypeDesignationBase#getCitation() citation} is needed |
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| 143 | * for an original designation as the type species is decided within the original paper. |
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| 144 | */ |
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| 145 | public static final NameTypeDesignationStatus ORIGINAL_DESIGNATION(){ |
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| 146 | return findTermByUuid(uuidOriginalDesignation); |
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| 147 | } |
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| 148 | |
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| 149 | /** |
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| 150 | * Returns the "present designation" name type designation status.</BR> |
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| 151 | * The type species is designated now (maybe possible in future, |
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| 152 | * after ICZN has changed and online publications are available). |
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| 153 | */ |
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| 154 | public static final NameTypeDesignationStatus PRESENT_DESIGNATION(){ |
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| 155 | return findTermByUuid(uuidPresentDesignation); |
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| 156 | } |
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| 157 | |
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| 158 | /** |
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| 159 | * Returns the "subsequent monotypy" name type designation status.</BR> |
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| 160 | * If only one nominal species was first subsequently included |
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| 161 | * in a nominal genus or subgenus established without included species, |
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| 162 | * that nominal species is automatically fixed as the type species, |
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| 163 | * by subsequent monotypy. |
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| 164 | * ICZN 69.3 |
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| 165 | */ |
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| 166 | public static final NameTypeDesignationStatus SUBSEQUENT_MONOTYPY(){ |
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| 167 | return findTermByUuid(uuidSubsequentMonotypy); |
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| 168 | } |
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| 169 | |
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| 170 | /** |
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| 171 | * Returns the "subsequent designation" name type designation status.</BR> |
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| 172 | * Several species were included in the original genus description. |
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| 173 | * One of these has been designated as type species in a later publication. |
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| 174 | * |
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| 175 | * ICZN 69.1 |
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| 176 | */ |
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| 177 | public static final NameTypeDesignationStatus SUBSEQUENT_DESIGNATION(){ |
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| 178 | return findTermByUuid(uuidSubsequentDesignation); |
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| 179 | } |
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| 180 | |
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| 181 | |
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| 182 | /** |
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| 183 | * Returns the lectotype name type designation status.</BR> |
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| 184 | * This may be the same as a {@link SUBSEQUENT_DESIGNATION()} but used in botany. |
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| 185 | * Maybe these 2 status will be merged in future. |
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| 186 | */ |
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| 187 | public static final NameTypeDesignationStatus LECTOTYPE(){ |
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| 188 | return findTermByUuid(uuidLectotype); |
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| 189 | } |
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| 190 | |
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| 191 | /** |
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| 192 | * Returns the "tautonomy" name type designation status.</BR> |
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| 193 | * The genus name is the same as the species name of one of the included species. |
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| 194 | * ICZN 68.4, 68.5 |
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| 195 | */ |
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| 196 | public static final NameTypeDesignationStatus TAUTONYMY(){ |
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| 197 | return findTermByUuid(uuidTautonymy); |
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| 198 | } |
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| 199 | |
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| 200 | |
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| 201 | @Override |
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| 202 | protected void setDefaultTerms(TermVocabulary<NameTypeDesignationStatus> termVocabulary) { |
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| 203 | termMap = new HashMap<UUID, NameTypeDesignationStatus>(); |
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| 204 | for (NameTypeDesignationStatus term : termVocabulary.getTerms()){ |
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| 205 | termMap.put(term.getUuid(), term); |
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| 206 | } |
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| 207 | } |
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| 208 | |
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| 209 | /** |
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| 210 | * Returns the boolean value indicating whether <i>this</i> type designation |
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| 211 | * status is itself "lectotype" or a kind of "lectotype" (true) or not |
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| 212 | * (false). Returns false if <i>this</i> type designation status is null.<BR> |
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| 213 | * A lectotype is a {@link eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase specimen or illustration} designated as the |
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| 214 | * nomenclatural type, when no holotype was indicated at the time of |
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| 215 | * publication of the "type-bringing" {@link TaxonNameBase taxon name}, when the |
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| 216 | * holotype is found to be assigned to taxon names belonging to more than |
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| 217 | * one {@link HomotypicalGroup homotypical group}, or as long as it is missing. |
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| 218 | * |
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| 219 | * @see #LECTOTYPE() |
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| 220 | * @see #HOLOTYPE() |
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| 221 | * @see eu.etaxonomy.cdm.model.common.DefinedTermBase#getKindOf() |
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| 222 | */ |
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| 223 | @Transient |
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| 224 | public boolean isLectotype(){ |
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| 225 | if ( |
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| 226 | this.equals(LECTOTYPE()) || |
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| 227 | this.equals(SUBSEQUENT_DESIGNATION()) || |
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| 228 | this.equals(PRESENT_DESIGNATION() ) |
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| 229 | ){ |
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| 230 | return true; |
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| 231 | }else{ |
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| 232 | return false; |
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| 233 | } |
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| 234 | } |
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| 235 | } |
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